Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60417g00017 ATGGCGTACGCAGCTATGAAGCCCAACAAACCCGGGTTGGAGGAGTCACAGGAGCAGATCCACAAGATCAGAATCACCCTCTCCTCCAAGCACGTCAAAAACCTCGAGAAGGTTTGCTCTGACTTGGTTCGTGGTGCCAAGGACAAGCGCCTCAGAGTGAAGGGACCCGTCAGGATGCCCACTAAGGTTCTTCACATCACTACCAGGAAATCCCCTTGTGGTGAAGGTATGTTCTCAACTTCCACTTGTGATTTCTCTATGCTTTTCGAATGTTAA 276 0.5 MAYAAMKPNKPGLEESQEQIHKIRITLSSKHVKNLEKVCSDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGMFSTSTCDFSMLFEC 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60417g00017 91 SUPERFAMILY Ribosomal protein S10 22 76 IPR036838 -
Stsc60417g00017 91 Pfam Ribosomal protein S10p/S20e 24 75 IPR027486 -
Stsc60417g00017 91 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 13 86 IPR001848 GO:0003735|GO:0005840|GO:0006412
Stsc60417g00017 91 SMART Ribosomal_S10_2 24 90 IPR027486 -
Stsc60417g00017 91 ProSitePatterns Ribosomal protein S10 signature. 46 61 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc60417g00017 91 PRINTS Ribosomal protein S10 family signature 22 35 IPR001848 GO:0003735|GO:0005840|GO:0006412
Stsc60417g00017 91 PRINTS Ribosomal protein S10 family signature 57 72 IPR001848 GO:0003735|GO:0005840|GO:0006412
Stsc60417g00017 91 Gene3D Ribosomal protein S10 domain 3 88 IPR036838 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60417g00017 Stsc-Chr60417 70042 70677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60417g00017 2 84 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 81.928 3.54e-43 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60417g00017 K02969 - gmx:100500179 151.369