Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60417g00013 ATGGCAGACTTACAAGCCTACATTCAACTCTTGCTAATTTGCTTAGTTTCTACCATCTTTGTCATTGGATCCATAATAATAAGAAAAAGAAAGCAAAACCATTCTTCTCTGCCGCTTCCGCCAGGTCCTAAAGCCGTACCTATCATCGGCCACCTCCACCTCCTCTCCTCAACGCCACACCAAGATTTCTACAAATTTTCAACACAATATGGACCTATAATTCACCTCTACCTCGGCTCCTCCCCTTGTGTGGTGGTTTCCACATCCGAGACAGCGAAGGAGTTCCTTAAGACACACGAAACCTCCTTCTCTGATCGCCCTGCACAGACTGTGGCCCTAGAGAGCCTAACCTATGGCTTCAAAGACTTCTTGTTTGCCCCGTACGGACCTTACTGGAAATTCATGAAGAAGTTGTGCATGTCGGAGCTCCTCGGCGGAAAAATGCTCCACCAGCTGCTCCATGTAAGGCAGCAAGAGACAAAGAGATTCCTTAGCGTGTTGGTGAAGAAAGGGGTGGCTGGTGAGGCCGTGGATCTTGGGGGGCAACTCATGACACTCTCCAACAACATTGTTTCCAGGATGATTATGGGACAAACAAGTTGTGGTGAGGGAGAGAGTGATGAGGAGGAGGTGAGAAAGCTGGTAGCCGACACGGCAGAGCTGACGGGGAAGTTCAACTTGTCGGATTTCTTATGGTTCCTAAAAGGTCTTGATATTCAGGGATTCAAGAAGAAGCTTAAGGAGATTCGGGTAAGGTTCGATGCCTTGCTGAACAGAGCAATTGAGGAGCATCAAGATGAAAGAGAAAAGAATAAGGATGAGGGTGATGTTAAGGATATTCTTGATGTTCTTCTTGACATATCTGAAGATGAAACTGCTGATATCAAATTGGATACTGAAAACATCAAGGCCTTCATAATGGACATACTTGTGGCAGGGACTGATACAACGGCGGTGACAATGGAATGGGCGATGGCAGAGTTAATGAAGAACCCAGGAGTTATGGAGAAAGCGCGTCAAGAGCTGGATGTTGTAGTTGGAAAGAAGAGGATCGTTGAAGAATCTGACATTCCCAACCTTCCTTACATTCAAGCAATTCTTAAAGAAACACTCAGGCTTCATCCTGCAGGTCCATTAATATTCAGGCAATCTTCTAAAACGGCCATAGTAAACGGTTATGAGATTCCAGCAAAAACTCGTTTGTTCATCAATGTGTGGGCTATTGGTAGGGACCCTAAGCATTGGGAGAATCCATTAGAGTTCAAGCCGGAGAGATTCATTGGAAAACATGTTGACGTAAGAGGACAACAATATGAGTTAATTCCGTTTGGGAGTGGAAGAAGAATGTGTCCTGGAACCTCTCTTGCTTTGCAAGTTGCACATGTGACTTTGGCTGCTATGCTTCAGTGCTTTGAATGGAAGGTTGAGGATCATAAGATCCTTGACATGGAAGAAAAACCTGCTGGGATTATTACTCCAAGGGCTAACCCTCTTATTGCTTTTCCTCTTCTAAGGCTTAATCCTTTTCCTTCTATTTCATTGTGTTAG 1548 0.4483 MADLQAYIQLLLICLVSTIFVIGSIIIRKRKQNHSSLPLPPGPKAVPIIGHLHLLSSTPHQDFYKFSTQYGPIIHLYLGSSPCVVVSTSETAKEFLKTHETSFSDRPAQTVALESLTYGFKDFLFAPYGPYWKFMKKLCMSELLGGKMLHQLLHVRQQETKRFLSVLVKKGVAGEAVDLGGQLMTLSNNIVSRMIMGQTSCGEGESDEEEVRKLVADTAELTGKFNLSDFLWFLKGLDIQGFKKKLKEIRVRFDALLNRAIEEHQDEREKNKDEGDVKDILDVLLDISEDETADIKLDTENIKAFIMDILVAGTDTTAVTMEWAMAELMKNPGVMEKARQELDVVVGKKRIVEESDIPNLPYIQAILKETLRLHPAGPLIFRQSSKTAIVNGYEIPAKTRLFINVWAIGRDPKHWENPLEFKPERFIGKHVDVRGQQYELIPFGSGRRMCPGTSLALQVAHVTLAAMLQCFEWKVEDHKILDMEEKPAGIITPRANPLIAFPLLRLNPFPSISLC 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60417g00013 515 PRINTS E-class P450 group I signature 440 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60417g00013 515 PRINTS E-class P450 group I signature 404 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60417g00013 515 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60417g00013 515 PRINTS E-class P450 group I signature 321 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60417g00013 515 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60417g00013 515 PRINTS E-class P450 group I signature 301 318 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60417g00013 515 PRINTS E-class P450 group I signature 364 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60417g00013 515 PRINTS E-class P450 group I signature 450 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60417g00013 515 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 443 452 IPR017972 GO:0005506|GO:0016705
Stsc60417g00013 515 Gene3D Cytochrome P450 24 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60417g00013 515 FunFam Cytochrome P450 family protein 30 500 - -
Stsc60417g00013 515 PRINTS P450 superfamily signature 441 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60417g00013 515 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60417g00013 515 PRINTS P450 superfamily signature 450 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60417g00013 515 PRINTS P450 superfamily signature 312 329 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60417g00013 515 PANTHER CYTOCHROME P450 98A9 13 506 - -
Stsc60417g00013 515 SUPERFAMILY Cytochrome P450 40 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60417g00013 515 CDD CYP93 71 502 - -
Stsc60417g00013 515 Pfam Cytochrome P450 40 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60417g00013 Stsc-Chr60417 61148 62995 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60417g00013 1 505 Cytochrome P450 AT5G06900 47.431 2.70e-168 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60417g00013 K24188 - gmx:100815706 701.819