Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60417g00006 ATGGATTCGAGTTCCCGTTTTCATCAACAACAGCAGCTAAACTCATCATCGCCATCATCATCAGGATTGCTTCGATTTCGCTCTGCTCCTTCTTCAGTGATCGAACAATTACATCAAGTTGAAGGCTCTTGTTCTTCTTCTCAACAGGCGGAGAGGTCCTCCTTCTTGAGGTTCTTGAATAATAGTAGTGACGAAGCTGCATCTGCATCTGCATCCGCTTCTTTCAGAGATTTTCAGGACAACAATAATAAGCCGCCGCTGCCGCCACCACATCATCGTCATCACAACCATTCCGCTTCCTCTGCGGATCTACCAAGGCAGAGCAGTTTCCCCGCTCCGCATTTCTCCTTCCACAACAATAATGGGTATGATACTACGAGTGTGACTAAAGGTGTTGGAAACTACAGCAGTGAACAAGCAGGTGAACTTAGTCTATCAACAATGAACAATCAAATTAGCTTCTCATCATCAAAAAGTCATTCTTCTTCATCTGCAACAGCAACTAACAATAATAATGGTGGATTATTCCTTAATTATGATTTTTGGAATGAGACATCATACAAGAGGAATGACCCAAATAGAATTCATAAGTTAATCTTTGATGCTAATCAGAATGAAGAGTTTGAGAATAATAAAGTAGTTGTTCATACAATATCGCATCAACTAAGTTTTCCAAAGGTGGCATCAGAGATGTTTGGAATGGAGAATATGATTCACTTTCCATTATCAGATTCTGTTCCATGTAGAATCAGAGCCAAAAGAGGCTGTGCTACTCATCCCAGAAGCATTGCCGAAAGGGTGAGAAGGACTAGGATTAGTGAACGAATGAGAAAATTGCAAGAGCTTGTTCCCAACATGGACAAGCAAGCCAGCACAGCAGACATGTTGGACATGGCTGTAGCATACATTAAAGATCTTCAGAAACAATTCAAGAATCTGAGTGACAGAAAGGCTAAATGCAAATGTATAAGGATGCAGAAGTCAGATCCTTCAAAAAATTCTTGA 1005 0.407 MDSSSRFHQQQQLNSSSPSSSGLLRFRSAPSSVIEQLHQVEGSCSSSQQAERSSFLRFLNNSSDEAASASASASFRDFQDNNNKPPLPPPHHRHHNHSASSADLPRQSSFPAPHFSFHNNNGYDTTSVTKGVGNYSSEQAGELSLSTMNNQISFSSSKSHSSSSATATNNNNGGLFLNYDFWNETSYKRNDPNRIHKLIFDANQNEEFENNKVVVHTISHQLSFPKVASEMFGMENMIHFPLSDSVPCRIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQASTADMLDMAVAYIKDLQKQFKNLSDRKAKCKCIRMQKSDPSKNS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60417g00006 334 MobiDBLite consensus disorder prediction 101 122 - -
Stsc60417g00006 334 SMART finulus 262 312 IPR011598 GO:0046983
Stsc60417g00006 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 259 322 IPR036638 GO:0046983
Stsc60417g00006 334 MobiDBLite consensus disorder prediction 1 27 - -
Stsc60417g00006 334 FunFam Transcription factor bHLH130 family 257 326 - -
Stsc60417g00006 334 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 29 330 - -
Stsc60417g00006 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 256 306 IPR011598 GO:0046983
Stsc60417g00006 334 MobiDBLite consensus disorder prediction 70 122 - -
Stsc60417g00006 334 Gene3D - 257 328 IPR036638 GO:0046983
Stsc60417g00006 334 Pfam Helix-loop-helix DNA-binding domain 261 307 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60417g00006 Stsc-Chr60417 32447 36682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60417g00006 13 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 35.977 1.13e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60417g00006 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60417g00006 - - ahf:112758816 402.134