Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60417g00005 ATGCATCACATCACTTCCATCTTCCTCCTCTTCTTCTTCTTCCTCCACTCCCCTCACTCCACACACACACTCAACTCCGACGGCATCTCACTTCTCGCTCTCAAGGCTGCAGTAGACTCCGATCCAACCGGAGCTCTCTCAGCCTGGTCCGACACCGACGCAACCCCATGCCGCTGGCCAGGAATCCTCTGCTCCCACAACAACCGCGTCATCCAACTCTCCCTCCCAAACAAGTCACTCTCCGGCTACCTCCCCTCCGAGCTCGCATCCCTAACCGCTCTCAGGCTTCTCTCACTTCCGTACAACAACTTCTCAAGAACAATCCCTTCCACTCTCTTCACCTTCCTCAACTCACTCCTCTTTCTCGACCTCTCCCACAACCAACTCACCGGCCCCATTCCCACCCAACTCCGATCCCTCAAATCTCTCCGCCATTTCGATCTATCCTCCAACTCCCTCAACGGCTCTCTCCCCCAAGAGCTTTCTCAACTAACTTCCCTCGTCGGAACCTTCAATCTTTCCTTTAACCGTTTCTCCGGCGAGATTCCCCCCTCTCTCGGCGAGCTTCCCGTCATTGTGAGCCTCGACCTCCGTGGAAACAATCTCACCGGAAAAATACCCCAAGTTGGCTCCCTCCTCAACCAGGGTCCCACCGCATTCGCCGGAAACCCTGGCCTCTGTGGATTTCCACTTCAGAACTCGTGCCCTGACTCTCAAAAACCTAACATCTTCCCCGCAGATGAGCCTCAGAACCCCAAGGCTCTTCGCGCCGGTGGTGCTGCCGGAGAAGAAGCAAAGGCTAAGGAACGTAGCGGCTCAGTCGCGGTGCTCGTGATCTCAGGCCTTTCCCTGGTGGTCGGCGTAGTTTCTATCTCGCTGTGGGTTTTCCGGCGACGGTGGAACAACGACGACGACAAAATGAGGAATAGAAAATTGAACAGTGAGGTTAATGGTGCTGGAGATGGGGCAGTAGGAGGAGGAGGAGGAGAGGGGCAACAAGGTAAATTCGTTCTGGTGGATGAAGGGTTTAGCTTGGAACTCGAAGATTTGCTGAGAGCCTCTGCTTACGTCGTTGGCAAGAGTAGGAGCGGAATCGTGTACAAGGTCGTGGGAGTTGGAAAGGGTGGCAATTGTGCGCCTCCGCCGCCGGCCACGGTTGTGGCCGTCCGGCGACTCAGCGAGGGCGATGCGACGTGGCGGCTGAAGGAGTTCGAGTCGGAGATGGAGGCCATTGCGAAGGTTCGGCACCCAAATGTGGTTCCTTTAAGAGCTTATTACTTCGCAAATGATGAGAAGCTTCTCATCACTGATTTCATCCGCAATGGAAGCTTGCATGCTGCTTTGCACGGCGGGTCTTCCAATTCATTGCTGACATTATCATGGACAGCAAGGTTGAAAATTGCCCAAGAAGCAGCAAGGGGCTTGATGTACATCCATGAGTTTGGTGGCCGGAAATATGTCCATGGCAACCTAAAATCAACGAAAATCTTATTGGACGATGATCTCCACCCTTACATATCAGGTTTTGGACTAACCCGTCTCGGTTTGGGTACCACGAAGTCATCCACAATGGCACCAAGACGACAGAGTTCCAGTGGATCCTCTACAATGGTTTCAAAGGCTGCAGCTTCTTCTAATAACTACTTGGCTCCTGAGGTTCGCATGGCAGGTGGTAGATTCACTCAGAAATGCGATGTGTATTCTTTTGGCATAATTCTATTAGAACTTTTGACTGGTAAACTTCCGGATTTCGGGCCAGAAAACGACGAGAAGGTGCTGGAGAGTTTTGTGAGGAAAGCATTCAGAGAGGAGCAGCCATTGTCCGATATCATAGATCCAGCTCTTCTGCCTGAGGTTTATGCCAAGAAACAAGTTGTTGCTGCATTTCATGTGGCTCTGAACTGCACCGAACTGGATCCAGAACTGCGTCCTAGGATGAAAACTGTGTCTGAGAGCCTTGATCACATCAAGATTCAGTGA 1980 0.5227 MHHITSIFLLFFFFLHSPHSTHTLNSDGISLLALKAAVDSDPTGALSAWSDTDATPCRWPGILCSHNNRVIQLSLPNKSLSGYLPSELASLTALRLLSLPYNNFSRTIPSTLFTFLNSLLFLDLSHNQLTGPIPTQLRSLKSLRHFDLSSNSLNGSLPQELSQLTSLVGTFNLSFNRFSGEIPPSLGELPVIVSLDLRGNNLTGKIPQVGSLLNQGPTAFAGNPGLCGFPLQNSCPDSQKPNIFPADEPQNPKALRAGGAAGEEAKAKERSGSVAVLVISGLSLVVGVVSISLWVFRRRWNNDDDKMRNRKLNSEVNGAGDGAVGGGGGEGQQGKFVLVDEGFSLELEDLLRASAYVVGKSRSGIVYKVVGVGKGGNCAPPPPATVVAVRRLSEGDATWRLKEFESEMEAIAKVRHPNVVPLRAYYFANDEKLLITDFIRNGSLHAALHGGSSNSLLTLSWTARLKIAQEAARGLMYIHEFGGRKYVHGNLKSTKILLDDDLHPYISGFGLTRLGLGTTKSSTMAPRRQSSSGSSTMVSKAAASSNNYLAPEVRMAGGRFTQKCDVYSFGIILLELLTGKLPDFGPENDEKVLESFVRKAFREEQPLSDIIDPALLPEVYAKKQVVAAFHVALNCTELDPELRPRMKTVSESLDHIKIQ 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60417g00005 659 Pfam Protein tyrosine and serine/threonine kinase 383 652 IPR001245 GO:0004672|GO:0006468
Stsc60417g00005 659 SUPERFAMILY Protein kinase-like (PK-like) 357 653 IPR011009 -
Stsc60417g00005 659 Gene3D Transferase(Phosphotransferase) domain 1 439 659 - -
Stsc60417g00005 659 FunFam Leucine-rich repeat receptor-like kinase 29 141 - -
Stsc60417g00005 659 Gene3D Ribonuclease Inhibitor 24 169 IPR032675 -
Stsc60417g00005 659 PRINTS Leucine-rich repeat signature 119 132 - -
Stsc60417g00005 659 PRINTS Leucine-rich repeat signature 140 153 - -
Stsc60417g00005 659 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Stsc60417g00005 659 SUPERFAMILY L domain-like 26 232 - -
Stsc60417g00005 659 FunFam Leucine-rich repeat receptor-like protein kinase 142 237 - -
Stsc60417g00005 659 ProSiteProfiles Protein kinase domain profile. 352 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60417g00005 659 Gene3D Ribonuclease Inhibitor 170 235 IPR032675 -
Stsc60417g00005 659 Gene3D Phosphorylase Kinase; domain 1 340 438 - -
Stsc60417g00005 659 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 657 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60417g00005 Stsc-Chr60417 26900 30156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60417g00005 24 657 Receptor kinase-like Gene Family AT3G57830 57.674 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc60417g00005 PK_Tyr_Ser-Thr 5.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60417g00005 - - gmx:100796011 890.182