Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60417g00003 ATGGAGCAAGCCACAGGAGTGTTGCGTGGATCCGCTCACGACGACGTCGTATTAGAGTCCATTCAATTCAACGAAGAAATCCGGGGAATCATGGCGCCAGCACCCGCGCCGGAAAACGGCAGCTCATTCACCGCGCTGCTCGAGCTGCCGCCGACGCAGGCCGTTGAGCTCCTTCATTCTCCTGATTGCGCGGCCGCCGCTCGGGAACCGCCGTGCCACGTCAACACCAACCAGAAACCCTACCTTCTTGACTCATACGGCGGCAATTTGACCTTCCCTTCCAACGCCGCGCTGATAGAACGCGCTGCCAAGTTCTCCGTCTTCGCTGGCGAGAATTCGCCGCCGGAGGATGCAGCTCGCCTGGCTCCGACATCTTTATCCGGCGCGGTGAAGAATGAGCCGCAGGAAACCGATTCGAACCCCTGCTCCACGCAGGGGTGCGTTTCGGATCCTGCGGTTGAGACCAAGAATGAGAGGACTCCGAAGAGGAAGGAGCGAGAGAAGAAGGGTAAGGGTTCGTTGAAGAAGAGCAAGGGCATCGCCGATGAGTCCTCCGGCGACGGCGAAAAGCTTCCATACGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACAGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTGCAAGAGCTGGTCCCCGGTTGCAACAAGATATCAGGAACAGCCTTGGTTCTGGATGAAATTATCAATCACGTGCAATCTCTACAACGTCAAGTGGAGTTCTTATCAATGAAATTAGCAGCTGTTAACCCAAGAATTGATTTCAGCCTAGATAGCTTGCTGGCTACTGATGGGTCATCTGTAATGGACAGCAACTTAACTAGCATGGCTACACCTGTTATGTGGCCAGAAAACCTAGCCGATGGTAACAGACAGCATTATCAACAACAGTGGCAATTTGATGCATTCCACCAACCACTTTGGGGGAGGGAAGAAGCCAACCATAATTTCATGACTCCAGAACATTCACTTCTGAGTTATGACTCGTCTGCTAATTCAGCATCCCTTCACTCAAATCAATTGAAGATGGAGCTCTGA 1089 0.5243 MEQATGVLRGSAHDDVVLESIQFNEEIRGIMAPAPAPENGSSFTALLELPPTQAVELLHSPDCAAAAREPPCHVNTNQKPYLLDSYGGNLTFPSNAALIERAAKFSVFAGENSPPEDAARLAPTSLSGAVKNEPQETDSNPCSTQGCVSDPAVETKNERTPKRKEREKKGKGSLKKSKGIADESSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLAAVNPRIDFSLDSLLATDGSSVMDSNLTSMATPVMWPENLADGNRQHYQQQWQFDAFHQPLWGREEANHNFMTPEHSLLSYDSSANSASLHSNQLKMEL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60417g00003 362 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 118 346 IPR024097 GO:0006355
Stsc60417g00003 362 MobiDBLite consensus disorder prediction 129 188 - -
Stsc60417g00003 362 Gene3D - 199 271 IPR036638 GO:0046983
Stsc60417g00003 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 252 IPR011598 GO:0046983
Stsc60417g00003 362 MobiDBLite consensus disorder prediction 129 151 - -
Stsc60417g00003 362 MobiDBLite consensus disorder prediction 155 188 - -
Stsc60417g00003 362 CDD bHLH_AtBPE_like 192 277 - -
Stsc60417g00003 362 FunFam transcription factor bHLH48-like isoform X1 199 271 - -
Stsc60417g00003 362 Coils Coil 242 262 - -
Stsc60417g00003 362 Pfam Helix-loop-helix DNA-binding domain 206 253 IPR011598 GO:0046983
Stsc60417g00003 362 SMART finulus 208 258 IPR011598 GO:0046983
Stsc60417g00003 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 271 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60417g00003 Stsc-Chr60417 8878 14332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60417g00003 10 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 51.444 1.13e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60417g00003 HLH 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60417g00003 - - gmx:100814124 550.436