Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc60416g00106 | ATGGATGATTACCGGACATTGGATGACCATGATCAGTATGAGTCGGCTGGACTGGATGATTCGTTGGAGGATCCTAGGGATTTTGATCGGGTAATGCAAGATCGAAGGGCTGCAGAGATGGAACTAGATGCTCGTGATGGTCGCGTTACCAATCGCAAATTCCCTCAGCTTCTCCATGACCAGGATACAGATGATGACAGTTACAGACCTTCTAAAAGGGCTCGAGCTGATTTCAGGGGTCCTAATCTGAGCGATGATGATGTCGACGGAATGCAGACATCACCTGGAAGGTCACAGCCAGGACATTCTAGAGATGATGTTCCGAGGGCTGATCAAACTGAGGATGATCCATATGAGGATGAATTTGATGAGGAAGGTGGCTATGAGATGTACCGAGTTCAAGGAACACTTAGAGAATGGGTTACAAGAGATGAAGTGCGCCGCTTCATAGCTAGAAAATTCAAGGATTTCTTGCTCACCTATGTTAATCCTAAAAATGAACACGGTGACTTTGAATATGTGCGGCTGATAAATGAAATGGTGTTAGCCAATAAGTGCAGTTTGGAGATAGATTACAAGCAATTTATCTATGTTCATCCCAACATCGCCATTTGGCTGGCTGATGCGCCTCAATCTGTCTTGGAAGTAATGGAAGATGTTGCTAAAAATAATTCCTATTCAGAGGTGAAAGTTGGATCCTGTCCTGAGTGTCAATCAAAAGGGCCATTTACTGTCAATATTGAGCAGACAATTTACAGGAATTTTCAAAAGCTCACTCTCCAAGAGAGCCCAGGAATCGTTCCTGCAGGTCGATTACCAAGATACAAGGAAGTTATATTATTGAACGATCTGATTGACTGTGCCCGCCCTGGGGAAGAGATTGAGGTCACAGGTATCTATACTAATAACTTCGATTTGTCCCTAAACACAAAGAATGGCTTTCCTGTGTTTGCCACTGTTGTCGAAGCAAATTATGTCACAAAGAAGCACGACCTGTTCTCTGCTTACAAACTTACTCAGGAAGACAAAGAAGAGATTGAGAACTTGAGCAAAGATCCAAGAATAGGAGAAAGGATTATCAAGTCTATTGCTCCATCAATCTATGGCCATGAGGACATCAAAACTGCAATAGCTTTAGCTATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGAAAGCATAGACTGAGAGGAGATATTAATGTTCTACTTCTTGGTGATCCAGGAACAGCGAAGTCACAATTTCTCAAGTACGTTGAGAAAACTGGGCAACGTGCTGTATACACTACTGGCAAGGGGGCGTCTGCTGTTGGTCTCACTGCTGCAGTTCACAAGGATCCTGTAACAAGGGAATGGACCTTGGAAGGAGGAGCCCTTGTCCTAGCTGACAAAGGGATCTGCCTTATTGATGAGTTTGACAAGATGAATGACCAAGACAGGGTAAGTATCCATGAAGCCATGGAGCAGCAGAGTATAAGCATATCAAAAGCGGGAATTGTTACATCTCTTCAGGCACGCTGCTCTGTCATTGCTGCCGCCAATCCTATTGGAGGAAGATATGATTCCTCCAAAACATTTTCTCAAAATGTTGAATTGACAGACCCCATTATTTCCCGTTTTGACATCCTCTGTGTTGTGAAGGATGTGGTCGATCCGGTCACTGATGAAATGCTAGCAAAGTTTGTAGTGGACAGTCACTCTAAGTCACAACCAAAGGGTGGTAATAGAGATGACAAGTCCGTGACAGAGTCCCAAGATGATTATGCATCTGGCGTGCCTGTTGATCCCGAGATACTTCCACAAGAGTTGCTAAAGAAGTATATTACTTATGCTAAATTAAATGTGTTCCCAAGACTACATGATGCTGATTTGGATAAACTGACACATGTTTACGCAGAACTGCGGAAAGAATCCTCGCACGGTCAAGGGGTCCCTATAGCTGTAAGGCATATTGAGTCAATGATAAGGATGTCTGAAGCTCATGCGAGGATGCATCTCAGGCAGCATGTCACACAAGAGGATGTGGACATGGCAATTCGAGTCCTACTTGATTCATTCATTTCAACCCAGAAATTTGGAGTGCAGAAAGCTCTTCAAAAGAGCTTTAGAAAATACATGACTTTCAAGAAGGACTACAATGAATTGCTGCTTTACCTTCTCCGCGAGCTTGTCAAGAATGCTTTGCGTTTTGAAGAAATTGTTACGGGATCTACTTCAGGTCTTGAACATATAGATGTCAAAGTAGATGATCTCCAGAATAAGGCTCAAGAGCATGAAATTTATGATCTTAAACCATTCTTCAACAGTAGTCACTTTTCAAGGGCCAATTTTGTATTGGATGAAGAGCATGGAGTCATCAGACATCGCCTTGCTAACTGA | 2376 | 0.4293 | MDDYRTLDDHDQYESAGLDDSLEDPRDFDRVMQDRRAAEMELDARDGRVTNRKFPQLLHDQDTDDDSYRPSKRARADFRGPNLSDDDVDGMQTSPGRSQPGHSRDDVPRADQTEDDPYEDEFDEEGGYEMYRVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNEHGDFEYVRLINEMVLANKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVAKNNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVTKKHDLFSAYKLTQEDKEEIENLSKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDPVTDEMLAKFVVDSHSKSQPKGGNRDDKSVTESQDDYASGVPVDPEILPQELLKKYITYAKLNVFPRLHDADLDKLTHVYAELRKESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALRFEEIVTGSTSGLEHIDVKVDDLQNKAQEHEIYDLKPFFNSSHFSRANFVLDEEHGVIRHRLAN | 791 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc60416g00106 | 791 | MobiDBLite | consensus disorder prediction | 1 | 84 | - | - | |
| Stsc60416g00106 | 791 | Pfam | MCM N-terminal domain | 152 | 224 | IPR027925 | - | |
| Stsc60416g00106 | 791 | Pfam | MCM OB domain | 233 | 302 | IPR033762 | - | |
| Stsc60416g00106 | 791 | CDD | MCM2 | 358 | 684 | - | - | |
| Stsc60416g00106 | 791 | MobiDBLite | consensus disorder prediction | 1 | 125 | - | - | |
| Stsc60416g00106 | 791 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 224 | 731 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc60416g00106 | 791 | Pfam | Mini-chromosome maintenance protein 2 | 1 | 123 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Stsc60416g00106 | 791 | SUPERFAMILY | Nucleic acid-binding proteins | 153 | 324 | IPR012340 | - | |
| Stsc60416g00106 | 791 | SMART | mcm | 206 | 686 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc60416g00106 | 791 | Gene3D | - | 335 | 708 | IPR027417 | - | |
| Stsc60416g00106 | 791 | Gene3D | - | 144 | 231 | - | - | |
| Stsc60416g00106 | 791 | Gene3D | - | 243 | 331 | IPR012340 | - | |
| Stsc60416g00106 | 791 | FunFam | DNA helicase | 335 | 708 | - | - | |
| Stsc60416g00106 | 791 | ProSiteProfiles | MCM family domain profile. | 355 | 561 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc60416g00106 | 791 | MobiDBLite | consensus disorder prediction | 563 | 593 | - | - | |
| Stsc60416g00106 | 791 | MobiDBLite | consensus disorder prediction | 569 | 583 | - | - | |
| Stsc60416g00106 | 791 | Pfam | MCM AAA-lid domain | 601 | 685 | IPR041562 | - | |
| Stsc60416g00106 | 791 | Pfam | MCM P-loop domain | 343 | 565 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc60416g00106 | 791 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 365 | 688 | IPR027417 | - | |
| Stsc60416g00106 | 791 | ProSitePatterns | MCM family signature. | 464 | 472 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Stsc60416g00106 | 791 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 535 | 543 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc60416g00106 | 791 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 396 | 411 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc60416g00106 | 791 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 508 | 520 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc60416g00106 | 791 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 456 | 470 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc60416g00106 | 791 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 484 | 497 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc60416g00106 | 791 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 319 | 330 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Stsc60416g00106 | 791 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 243 | 257 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Stsc60416g00106 | 791 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 304 | 315 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc60416g00106 | Stsc-Chr60416 | 569952 | 574897 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc60416g00106 | 224 | 786 | Core DNA Replication Machinery Family | AT1G44900 | 82.416 | 0.0 | 936 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc60416g00106 | K02540 | - | pop:18094485 | 1138.25 |