Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60416g00102 ATGGCTGAGCTGAAAGAATTCGAGCGCTTCGACGTCGTTTCAGACCATTCAGACCACTACTTTTCGGAACCACCCGCTGAAAACACCAAGAAACAGAAAGAAAACCGCAACCCGGAAGCAAGCAACCATGCTGCCCGTAACTGCTTCAGCAACACGAGCAGCAACGTGTACAAGAACATAATGCGAGAATGGAAGATCCTCTCCAACGGCCTCCCCGACTCCATCTACGTCCGCGTCTACGAGAACCGCATCGATCTCATGAGGGCGGTAATCGTCGGCGCCGCGGGTACACCCTACCACGATGGACTTTTCTTCTTCGACATTGTTTTCCCGCCAAATTACCCAGCCCAACCTCCCAAGGTTCACTACCTCTCATGCGGCTTCAAACTCAACCCCAACCTTTACCATAACGGCGAAGTTTGCCTCAGCCTCATCAACACCTGGATCGGTAAAAAGAACGAAAGGTGGGACCCATGCGGTTCAACCACCGTTTTGCAGCTCCTCGTTTCTCTCCAAGGCCTTGTCCTAAACGACAAGCCGTTTTTCAACGAGGCCGGGTCTGAAATCTTCGGACGCGCTTTCTTTGAGAAGCAAGCGCGTTCTTATAACTACTCCGTTTTCTTGCTTAACTGTAGGACCATGCTGTTTTGGCTCCAACGGCCTCCGCGGAACTTCGAGGTGTTCGTTAACGCGCACTTCCGTGACCGCGCGTGTCGGATTCTGAGAGCGTGCAATGAGTACGTGAGCGGGCGCGTGAGGGTTGGATGGTACGGTGTGAGCGACGGCGCGGAGGAGACCGGTGGCTCTCCTCGTCGGTCGCGCGTGAAGGTCTCGTCGGAATTCAAGGCGTCGATGGGGAAGCTGTATCTTTGGATGGTTGCGGCGTTTCAAATGCACAGTTTTTCGTTGTGTTCGGAGCTTTTGCAATTGGAGAACGGTGATGATAACGGTGGTTCGTCGAAGAATAAGGGACATGGTGGTGGTGACAGAAAGTATGGGAAGATTGTTAGAAGCTGTCTGGGAGGTTTTGGAAGTTTCATGCTCGGTAGGAACCCACGGGAGCTGCTTGCTGCAAGTCAAACTAGTGTTCTAAAGGAGACAAGGGCAGATTCCAAGGATCGGAAGGACATTAAGCTTGGTTCGGCTGCCGCCGGTGGTGGTTTTAGGGTTAGGGTTTCCAAGAGATGTGGTATGCTTCAGGCATTCATGAATCTGCGCTCTCTCTGCTTGAGGCCATTTGGGCTCGCTGACGACAACGTCGACTCCTCCCCCGTCGGAGTCAACGGCGCCACCTTCAGAGGCAGCGGAAGCTTTCGAGACGGCGGCGGCGGCGCTAGAGAAGACAATGACAGCCTTCTCTGGTCCCGCGACGTCGGAAAATATGGCTCCGGTGATTTCTCCATGGCCGTCGTCCAGGGCAACCAGGTCCTCGAAGACCAGAGCCAAATAGAGTCCGGTCCCCTCGGCACCTTCGTTGGCATCTACGACGGTCACGGAGGACCCGACGCCTCAAGATTCGTATGCGATCACCTATTTCGCCATTTTCAAGCAATATCGGCCGAGTCAAATGGAGGTGTGACAACTGAGACCATTGAGAGGGCATTCCGCCAAACAGAGGAAGGGTATACTGCCCTTGTGTCAGACCTGTGGAGCACTCAGCCTCAAGTCGCAAACGCCGGGACTTGTTGTCTGGTGGGAGTTATATTTAAGCAGACACTCTTTGTGGCAAACCTTGGAGATTCCCGTGTTGTGTTGGGCAAGAAATTTGGCATCACCGGAGATGTTGCTGCAATTCAGCTCTCTACAGAACACAATGCAAATCTTGAAGCTGTGAGACAGGAGCTTAAAGTGTTACACCCACATGATCCCGAGATTGTGGTCCAAAAATATGGAGTGTGGAGAGTCAAAGGCATTATTCAGATTTCTAGATCTATAGGTGATGTATATATGAAAGACGCAAAATTTAACCGGGAACCGCTTCCTGCAAAATTCAGACTTCCTGAACCCATGCACATGCCTATCTTGAGTGCTAATCCTGCTATTATTTCTCGTCGTCTCCAACCAAGTGATTCTTTCCTTATATTTGCATCAGATGGTTTATGGGAACAGCTGAGCAATGAAGAGGCTGTAGAAATTGTCAACAGCAATCCTCACTCGGGTAGTGCCAAGATGCTTGTCAATGCTGCCCTACAGGAAGCAGCAAGAAAACGAGAGATGCGATTTTCGGACCTGCGCAAGATAGACAAGAAGGTTCGACGCCATTTTCATGATGATATATCTGTTATTGTTTTATTCTTGAACCACGACCTTATATCCAAAGGCACAGTGCTAAACCCACCACTCTCACTTCGAAGCGAACTCGATCACTGA 2370 0.5105 MAELKEFERFDVVSDHSDHYFSEPPAENTKKQKENRNPEASNHAARNCFSNTSSNVYKNIMREWKILSNGLPDSIYVRVYENRIDLMRAVIVGAAGTPYHDGLFFFDIVFPPNYPAQPPKVHYLSCGFKLNPNLYHNGEVCLSLINTWIGKKNERWDPCGSTTVLQLLVSLQGLVLNDKPFFNEAGSEIFGRAFFEKQARSYNYSVFLLNCRTMLFWLQRPPRNFEVFVNAHFRDRACRILRACNEYVSGRVRVGWYGVSDGAEETGGSPRRSRVKVSSEFKASMGKLYLWMVAAFQMHSFSLCSELLQLENGDDNGGSSKNKGHGGGDRKYGKIVRSCLGGFGSFMLGRNPRELLAASQTSVLKETRADSKDRKDIKLGSAAAGGGFRVRVSKRCGMLQAFMNLRSLCLRPFGLADDNVDSSPVGVNGATFRGSGSFRDGGGGAREDNDSLLWSRDVGKYGSGDFSMAVVQGNQVLEDQSQIESGPLGTFVGIYDGHGGPDASRFVCDHLFRHFQAISAESNGGVTTETIERAFRQTEEGYTALVSDLWSTQPQVANAGTCCLVGVIFKQTLFVANLGDSRVVLGKKFGITGDVAAIQLSTEHNANLEAVRQELKVLHPHDPEIVVQKYGVWRVKGIIQISRSIGDVYMKDAKFNREPLPAKFRLPEPMHMPILSANPAIISRRLQPSDSFLIFASDGLWEQLSNEEAVEIVNSNPHSGSAKMLVNAALQEAARKREMRFSDLRKIDKKVRRHFHDDISVIVLFLNHDLISKGTVLNPPLSLRSELDH 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60416g00102 789 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 7 308 - -
Stsc60416g00102 789 ProSitePatterns PPM-type phosphatase domain signature. 491 499 IPR000222 GO:0043169
Stsc60416g00102 789 Gene3D Ubiquitin Conjugating Enzyme 3 266 IPR016135 -
Stsc60416g00102 789 FunFam Probable protein phosphatase 2C 42 456 774 - -
Stsc60416g00102 789 FunFam Putative ubiquitin-conjugating enzyme E2 38 1 299 - -
Stsc60416g00102 789 SMART PP2C_4 452 764 IPR001932 -
Stsc60416g00102 789 MobiDBLite consensus disorder prediction 16 46 - -
Stsc60416g00102 789 CDD PP2Cc 466 766 IPR001932 -
Stsc60416g00102 789 MobiDBLite consensus disorder prediction 16 40 - -
Stsc60416g00102 789 SUPERFAMILY UBC-like 46 222 IPR016135 -
Stsc60416g00102 789 Pfam Ubiquitin-conjugating enzyme 60 185 IPR000608 -
Stsc60416g00102 789 Gene3D - 451 775 IPR036457 -
Stsc60416g00102 789 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 55 215 IPR000608 -
Stsc60416g00102 789 CDD UBCc 57 202 IPR000608 -
Stsc60416g00102 789 SMART ubc_7 58 215 - -
Stsc60416g00102 789 ProSiteProfiles PPM-type phosphatase domain profile. 465 766 IPR001932 -
Stsc60416g00102 789 Pfam Protein phosphatase 2C 489 737 IPR001932 -
Stsc60416g00102 789 SUPERFAMILY PP2C-like 475 767 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60416g00102 Stsc-Chr60416 548409 557356 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60416g00102 398 784 PP2C-type Phosphatase Gene Family AT4G38520 53.535 2.93e-141 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60416g00102 K01102 - gmx:100790813 609.757