Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60416g00078 ATGAATCCAAATGAGCACATTAATCATAATGTCTCCGGTAATGGTGTTTCCTTGGACACTTTGGGCAATGGTGGATTGCAAAGTCAGGATAGCTTTGGAATGTGGGTGAACCATATCATGTCTGATTCGCCATGTTCCGTAGATGAGTCAGCCGTTGAATCATCAGTTTCGTCCATTCACGAATCATATCCTTCTCTAGTTGTGGATGATAAGCAAACTGCTTTGCCAGAACAAGTATTTAATCTCACTGATGTGTCACCTGCATGGGTGCCTTCTACTGAGAACTCAAAGATCCTCGTGACTGGATTCTTTCTTAAGGATCATCCTCATCTTTCAAAGTCCAATCTATTGTGTGTCTGTGGTGATGTAAGTATTCCTGCAGAATGTGTTCAGGCTGGGGTCTACCGATGCTGGGTACCTCCACATTCTCCTGGATTTGTGAATCTCTACTTGAGCTTTGATGGCCACAAGCCTATCAGCCAAGTTGTTAATTTTGAGTATCGTACTCCCATTCTACATGATCCTGCAGCTTCCATGGAAGCGAATGACAACTGGGACAAGTTCCAGTTCCAGATGAGGCTTGCTTATCTGCTTTTTAACAAAGAGAATAGTCTTGATGTTTTCTCTTGTACAGTATCACCTAATAGACTAAAGGAGGCCAGAAACTTTGCCACCAGAACGTCATTTATTTCCAGCAGTTGGCAATACTTGATGAAGTCAACTCAATACAACAGAATTCCATATACACAAGCAAAAGAGGATCTATTTGGGATTTCTATAAGAAGCAGACTCAAGGAGTGGATTTTAGAAAGAATTATTTTAGGCTGTAAGACTAATGCATATGATGAACAAGGCCAAAGTGTAATCCATTTGTGCGCAATTCTGGATTATACTTGGGCTGTTTCCCTATTTTCATGGTCAGGTTTGTCACTGGATTTCCGTGACAAGTTTGGGTGGACAGCTCTTCATTGGGCAGCATATTATGGAAGGGAGAAAATGGTTGCAACTCTGTTGTCAGCTGGGGCAAAGCCAAATTTGGTTACGGATCCAACTCCACAAAATCCTGCTGGACAACATGCTTCTGATCTTGCATATATGAATGGTTATGATGGCTTAGCAGGTTATCTTTCGGAAAAGGCTCTGGTTGAGCAGTTCAATGACATGAGTTTAGCTGGAAATATCAGCGGCCAGCTGGAAACCAGCACAACTGACCAAGCAGATCCTGAGAACCTCCCAGAGGACCAGCGGTACCTGAAGGATACATTGGCAGCTTACCGAACAGCTGCTGAGGCAGCAGCACGCATACAAGCTGCATTTCGGGAGCATTCCCTAAAACTGCAAACTGAAACCATAGAGCTTTTAACTCCAGAGGCTGAAGCACGCAAAATAGTAGCAGCAATGAAGATTCAGCATGCCTTTAGGAACTTCGAGTCAAGGAAAATGATGAAAGCTGCTGCTCGCATTCAGTACACATTCCGCACATGGAAGATTCGCAGAGAATTCCTCAACATGCGTCAACAGGCTATTAAAATTCAAGCTGCTTTCCGGTGCTTTCAAGTGAGGAAGCATTACCGTAAAATTTTGTGGTCTGTTGGGGTGGTCGAGAAAGCACTATTGCGTTGGCGTTTAAAGAGAAAAGGTTTGCGTGGGCTGCATGTTAACACTGCTGATCAGAAGCAGGAAGGCGATGGAGAGGAGGAATTCTTTCGAATTGGTAGGAAGCAAGCTGAAGAACGCGTTGAGAGATCTGTAGTGCGCGTGCAGGCCATGTTCCGTTCAAAGAAGGCACAACAAGATTATAGCAGGATGAAGGTGGCCCTTAATCAAGCAAATCTGGATCGGGAATATGAAGAATTCTTTCATACTGAAGATAACATGGAAATTAATACATAG 1893 0.4353 MNPNEHINHNVSGNGVSLDTLGNGGLQSQDSFGMWVNHIMSDSPCSVDESAVESSVSSIHESYPSLVVDDKQTALPEQVFNLTDVSPAWVPSTENSKILVTGFFLKDHPHLSKSNLLCVCGDVSIPAECVQAGVYRCWVPPHSPGFVNLYLSFDGHKPISQVVNFEYRTPILHDPAASMEANDNWDKFQFQMRLAYLLFNKENSLDVFSCTVSPNRLKEARNFATRTSFISSSWQYLMKSTQYNRIPYTQAKEDLFGISIRSRLKEWILERIILGCKTNAYDEQGQSVIHLCAILDYTWAVSLFSWSGLSLDFRDKFGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPTPQNPAGQHASDLAYMNGYDGLAGYLSEKALVEQFNDMSLAGNISGQLETSTTDQADPENLPEDQRYLKDTLAAYRTAAEAAARIQAAFREHSLKLQTETIELLTPEAEARKIVAAMKIQHAFRNFESRKMMKAAARIQYTFRTWKIRREFLNMRQQAIKIQAAFRCFQVRKHYRKILWSVGVVEKALLRWRLKRKGLRGLHVNTADQKQEGDGEEEFFRIGRKQAEERVERSVVRVQAMFRSKKAQQDYSRMKVALNQANLDREYEEFFHTEDNMEINT 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60416g00078 630 ProSiteProfiles IQ motif profile. 504 528 IPR000048 GO:0005515
Stsc60416g00078 630 ProSiteProfiles Ankyrin repeat region circular profile. 317 345 - -
Stsc60416g00078 630 FunFam Calmodulin-binding transcription activator 2 480 528 - -
Stsc60416g00078 630 ProSiteProfiles IQ motif profile. 465 491 IPR000048 GO:0005515
Stsc60416g00078 630 Gene3D - 479 528 - -
Stsc60416g00078 630 ProSiteProfiles IQ motif profile. 581 609 IPR000048 GO:0005515
Stsc60416g00078 630 SMART ANK_2a 317 346 IPR002110 GO:0005515
Stsc60416g00078 630 Gene3D - 254 387 IPR036770 -
Stsc60416g00078 630 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 20 607 - -
Stsc60416g00078 630 SUPERFAMILY Ankyrin repeat 266 379 IPR036770 -
Stsc60416g00078 630 Gene3D Immunoglobulins 76 171 IPR013783 -
Stsc60416g00078 630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 430 531 IPR027417 -
Stsc60416g00078 630 Pfam Ankyrin repeats (3 copies) 269 346 IPR002110 GO:0005515
Stsc60416g00078 630 ProSiteProfiles Ankyrin repeat profile. 317 349 IPR002110 GO:0005515
Stsc60416g00078 630 SMART iq_5 503 525 IPR000048 GO:0005515
Stsc60416g00078 630 SMART iq_5 480 502 IPR000048 GO:0005515
Stsc60416g00078 630 SMART iq_5 579 601 IPR000048 GO:0005515
Stsc60416g00078 630 Pfam IQ calmodulin-binding motif 507 525 IPR000048 GO:0005515
Stsc60416g00078 630 Pfam IQ calmodulin-binding motif 483 501 IPR000048 GO:0005515
Stsc60416g00078 630 ProSiteProfiles IQ motif profile. 481 510 IPR000048 GO:0005515
Stsc60416g00078 630 SUPERFAMILY E set domains 81 168 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60416g00078 Stsc-Chr60416 418530 421880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60416g00078 5 613 CAMTA Transcription Factor Family AT3G16940 56.792 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60416g00078 K21596 - gmx:100793970 935.25