Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60416g00067 ATGGTGGATTCAACTGGAAAAGGATCGGACTCCGACGATGCCAGCCCTAACTCCGCCGCTGCCGGTAAAAGTCCAACAACCGAGCAGAAGAAGACATGCGCCGACTGCGGTACCTCCAAGACTCCTCTCTGGAGAGGTGGCCCCGCTGGCCCCAAGTCTCTATGCAATGCCTGCGGGATCAGAAGCCGCAAGAAGAAGAGAGCCATTCTCGGAATCACGAGAGGCACCACCGACGAAGTTAAAAAGGGGAAAAGAAGCAACACCGTCAGCACTAGTAATAATAACAAGTTTGGGGATAGCTTTGGTTTCAAGCAGAGGTGGATCGCAATGGCGAGGCAGAGATCGAATCCCGCGCACAGCCACAGGAACAAGCTGGGAGAGGAAGAACAAGCTGCTTTCCTGCTCATGTCTCTCTCTTATGGATCCGTTTATGCCTAA 438 0.532 MVDSTGKGSDSDDASPNSAAAGKSPTTEQKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGITRGTTDEVKKGKRSNTVSTSNNNKFGDSFGFKQRWIAMARQRSNPAHSHRNKLGEEEQAAFLLMSLSYGSVYA 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60416g00067 145 ProSiteProfiles GATA-type zinc finger domain profile. 27 63 IPR000679 GO:0006355|GO:0043565
Stsc60416g00067 145 MobiDBLite consensus disorder prediction 74 97 - -
Stsc60416g00067 145 MobiDBLite consensus disorder prediction 1 47 - -
Stsc60416g00067 145 MobiDBLite consensus disorder prediction 1 36 - -
Stsc60416g00067 145 Pfam GATA zinc finger 33 67 IPR000679 GO:0006355|GO:0043565
Stsc60416g00067 145 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 26 67 - -
Stsc60416g00067 145 ProSitePatterns GATA-type zinc finger domain. 33 58 IPR000679 GO:0006355|GO:0043565
Stsc60416g00067 145 CDD ZnF_GATA 32 85 IPR000679 GO:0006355|GO:0043565
Stsc60416g00067 145 Gene3D - 27 96 IPR013088 GO:0006355|GO:0008270
Stsc60416g00067 145 PANTHER OS01G0976800 PROTEIN 15 145 - -
Stsc60416g00067 145 SMART GATA_3 27 86 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60416g00067 Stsc-Chr60416 359899 360548 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60416g00067 24 145 C2C2-Gata Transcription Factor Family AT5G49300 57.377 4.14e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc60416g00067 GATA 1.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60416g00067 - - aprc:113847917 186.808