Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc60416g00066 | ATGGTGGATTCAACTGGAAAAGGATCGGACTCAGACGATACAAGCCCTAACTCCGCAGCCGCCGCCTGTAAAAGTCCAACGACCGAGCAGAAGAAGACATGCGCCGACTGCGGTACCTCCAAGACTCCTCTCTGGAGAGGTGGCCCCGCTGGCCCCAAGTCTCTATGCAATGCCTGCGGGATCAGGAGCCGCAAGAAGAAGAGAGCCATTCTCGGAATCACGAGAGGAACCACCGACGAAGTTAAAAAGGGGAAAAGAAGCAACAGCGTCAGCAATAATAATAGTAATAACAAGTTTGGGGATAGCTTTGGTTTCAAGCAGAGGTGGATCGCAATGGCGAGGCAGAGATCGAATCCAGCGCACAGCCACAGGAACAAGTTGGGAGAGGAAGAACAAGCTGCTTTCCTGCTTATGTCTCTCTCTTACGGATCCGTTTATGCCTAA | 444 | 0.518 | MVDSTGKGSDSDDTSPNSAAAACKSPTTEQKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGITRGTTDEVKKGKRSNSVSNNNSNNKFGDSFGFKQRWIAMARQRSNPAHSHRNKLGEEEQAAFLLMSLSYGSVYA | 147 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc60416g00066 | 147 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Stsc60416g00066 | 147 | CDD | ZnF_GATA | 33 | 86 | IPR000679 | GO:0006355|GO:0043565 | |
| Stsc60416g00066 | 147 | SMART | GATA_3 | 28 | 87 | IPR000679 | GO:0006355|GO:0043565 | |
| Stsc60416g00066 | 147 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 27 | 68 | - | - | |
| Stsc60416g00066 | 147 | Pfam | GATA zinc finger | 34 | 68 | IPR000679 | GO:0006355|GO:0043565 | |
| Stsc60416g00066 | 147 | PANTHER | OS01G0976800 PROTEIN | 14 | 147 | - | - | |
| Stsc60416g00066 | 147 | ProSiteProfiles | GATA-type zinc finger domain profile. | 28 | 64 | IPR000679 | GO:0006355|GO:0043565 | |
| Stsc60416g00066 | 147 | MobiDBLite | consensus disorder prediction | 75 | 99 | - | - | |
| Stsc60416g00066 | 147 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
| Stsc60416g00066 | 147 | ProSitePatterns | GATA-type zinc finger domain. | 34 | 59 | IPR000679 | GO:0006355|GO:0043565 | |
| Stsc60416g00066 | 147 | Gene3D | - | 28 | 98 | IPR013088 | GO:0006355|GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc60416g00066 | Stsc-Chr60416 | 355762 | 356430 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc60416g00066 | 25 | 147 | C2C2-Gata Transcription Factor Family | AT5G49300 | 56.911 | 3.36e-41 | 132 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2C2-GATA | Stsc60416g00066 | GATA | 1.4e-16 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc60416g00066 | - | - | aprc:113847917 | 175.252 |