LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc60416g00051	ATGGGACAAGAATCAGATTCCAAAACCCAGTTGGTATTACAGATTTGCTCCATTGCCACCCGTCCTGTGGTATGTCCCCATAGGCTTCTCTCAAACTCACCCAACCCATCATCTTTCATTGACTGGTATTGCATTCTCGGTGTGGAAGAAAATGCAGGGATAAACACCATTCGCAAGAGATACCATAAGCTAGCCCTGCAACTTCATCCAGATAAGAACAAACACCCCAAGGCTGAAATTGCCTTCAAGCTTGTTTCTGAGGCCTATACATGTTTATCCAATGCTGCAAAGAGAAAAGCATTCGACTTGGACAGACTCAAGAGCTTATGCTTTGAATGCAGAAGAATCCCCAATACATCAGGAAATACCGCCGGTTCGGGGTTCAAGGCATGGAATATTATCAACATCTCAAAGTCTTTCAAGCTCTGGAGAAACATAAGAGACATGAGAGATAGATTCAAGGAAGAGGCGAAGGTGATAGAGAACTGTCTGCGAGCGAATTCGATGTCAAGGAAAGAATCTCCTCTCTATAATCCGGTTGGATACCTACAAAGAAGCAAGTCCCTGCACAGATTTGATAGAGAAACCCCTGTTTTCAATCCCTCAGATTATTTGTACCAAGGCTACCCTCATCTGAGGAGCAATGTTTACAAGAATTCTTCCACATATTGGTACTTGCAGACAGATAGTATGCTGCATAATTGA	705	0.4312	MGQESDSKTQLVLQICSIATRPVVCPHRLLSNSPNPSSFIDWYCILGVEENAGINTIRKRYHKLALQLHPDKNKHPKAEIAFKLVSEAYTCLSNAAKRKAFDLDRLKSLCFECRRIPNTSGNTAGSGFKAWNIINISKSFKLWRNIRDMRDRFKEEAKVIENCLRANSMSRKESPLYNPVGYLQRSKSLHRFDRETPVFNPSDYLYQGYPHLRSNVYKNSSTYWYLQTDSMLHN	234

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc60416g00051	234	SUPERFAMILY	Chaperone J-domain	35	103	IPR036869	-
	Stsc60416g00051	234	Gene3D	DnaJ domain	40	158	IPR036869	-
	Stsc60416g00051	234	CDD	DnaJ	41	94	IPR001623	-
	Stsc60416g00051	234	Pfam	DnaJ domain	41	102	IPR001623	-
	Stsc60416g00051	234	PRINTS	DnaJ domain signature	61	76	IPR001623	-
	Stsc60416g00051	234	PRINTS	DnaJ domain signature	77	97	IPR001623	-
	Stsc60416g00051	234	PRINTS	DnaJ domain signature	43	61	IPR001623	-
	Stsc60416g00051	234	PANTHER	BNAC03G44070D PROTEIN	21	116	-	-
	Stsc60416g00051	234	SMART	dnaj_3	40	97	IPR001623	-
	Stsc60416g00051	234	ProSiteProfiles	dnaJ domain profile.	41	105	IPR001623	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc60416g00051	Stsc-Chr60416	264986	266183	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc60416g00051	1	104	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	34.862	1.57e-11	61.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc60416g00051	-		-	gmx:100816858	390.193

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