Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60416g00048 ATGGTTCTTTTTCCATCGTTTGTCAATGGATTGGCACGAACTGTGTCCATCAAGAAAGAGAAGAAGTGTCAGAAAGATGATGATGGAAGAAGAGCCGTGAAAGAAATGGCAAAGGAAGCAAGGAAGAATGATTTGTTATTGAAATCATCAGGAGTTGTAAAGTCCACAAAGGCCAACACCTTTGTCTCTGTATTCACAAATAAGGGCCAGAAAGGAGTCAATCAAGATCGTGTCCTTGTTTGGGAGGAATTTGGTTGCCAAGGGGACATGATGTTATGTGGAATTTTTGATGGACATGGCCCTTGGGGACACTTAGTAGCCAGGAGGGTGAGGAAACTAGTACCAGCTTTTCTGCTATGCAATTGGCAAAAAAGTGTGGCTTCAACATCACTTGACCTGGATATTAAGCTGGAAGCAGATGAATTTATTCATGGATTTGATGTATGGAAGCAATCCTACTTGAAGTCTTATGCTGCCATTGATCAAGATCTAAAGCACCACACTGGGATTGATTCCTTTAGAAGTGGTACTACAGCTTTGACAATTATCAAACAGGGAGATTATCTGATAACAGCAAACCTAGGTGATTCTAGAGCTGTCCTAGCAACAACTTCAGAAGATGGGAAATTGATTCCAATTCAGCTAACCACAGACTTGAAACCAAATTTACCAGAGGAGGCGAAGCGAATAACGGAATCAGGAGGGGAAGTATATTGTATGGAAGATGAAGAAGGAGTATACAGAGCATGGATGCCTAGTGGTAGATCAGCAGGGCTTGCAATTTCAAGAGCTTTTGGTGATCACTGCATGAAGGACTTTGGATTAATATCTGTGCCAGAAGTCACACGCACAAAACTCACCAAAAGGGATCAATTTGTAATATTGGCTTCAGATGGGGTATGGGATGTTTTGTCAAATGAGGAAGCAGTGAAGATTGTGTCTTCTTCTTCATCTTCAGGGGGAGAAAGAGCAGCAGAAAGGGTAGTGAAACGTGCAATCCATGAATGGAAACGCAAGAGAAGTAGCATTGCTATGGATGATATGTCTGTCATTTGCCTCTTCTTTCATTCTCACTCGGTCTCATCAGCTTCCTCCAACTAA 1101 0.4196 MVLFPSFVNGLARTVSIKKEKKCQKDDDGRRAVKEMAKEARKNDLLLKSSGVVKSTKANTFVSVFTNKGQKGVNQDRVLVWEEFGCQGDMMLCGIFDGHGPWGHLVARRVRKLVPAFLLCNWQKSVASTSLDLDIKLEADEFIHGFDVWKQSYLKSYAAIDQDLKHHTGIDSFRSGTTALTIIKQGDYLITANLGDSRAVLATTSEDGKLIPIQLTTDLKPNLPEEAKRITESGGEVYCMEDEEGVYRAWMPSGRSAGLAISRAFGDHCMKDFGLISVPEVTRTKLTKRDQFVILASDGVWDVLSNEEAVKIVSSSSSSGGERAAERVVKRAIHEWKRKRSSIAMDDMSVICLFFHSHSVSSASSN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60416g00048 366 CDD PP2Cc 61 355 IPR001932 -
Stsc60416g00048 366 ProSiteProfiles PPM-type phosphatase domain profile. 61 355 IPR001932 -
Stsc60416g00048 366 Gene3D - 47 357 IPR036457 -
Stsc60416g00048 366 SMART PP2C_4 52 353 IPR001932 -
Stsc60416g00048 366 SUPERFAMILY PP2C-like 54 356 IPR036457 -
Stsc60416g00048 366 PANTHER PROTEIN PHOSPHATASE 42 353 IPR015655 GO:0004722|GO:0006470
Stsc60416g00048 366 Pfam Protein phosphatase 2C 141 334 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60416g00048 Stsc-Chr60416 248240 250745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60416g00048 4 356 PP2C-type Phosphatase Gene Family AT3G05640 53.672 1.81e-147 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60416g00048 - - gmx:100817397 577.785