Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60416g00047 ATGGAATCGCGAATTAACGGTGGCAGCGGCAACAGCACCCACCACTACCAGCAAATTCAGGCGGAGGCTTCCACGTCGTCGTCGTTCTGGCAAGCGCCGGAGCCCAGTCGGATCTTCGATGAGTTGCCGGAAGCCACCATTATATCCGTGTCTCGGCCAGATGCCGCTGACATTACCCCCGTTCTCCTCTCTTACACCATTCTTTTTCGCTATAGACAGTTCAAGTGGCAGCTGGTGAAGAAAGCTTCCCAAGTGTTTTATTTGCATTTTATGTTAAAGAAGCGCGCCTTTGTTGAGGAAATGCATGAGAAGCAAGAACATGTTAAAGAATGGCTTCAAAATCTAGGAATAGGAGACCTCACAGCTTTGGTGCACTTTGATGATGAAGCTGACGATGAAGTCATGCCTTTAAGTCAACAACATCACATTCACGATGAAAGTGTTAAAGAGAGAGATGTTCCATCTAGTGCTGCTCTACCAGTTCTGCGGCCAGCCTTAGGAACACAAGAGATGACAGCAGACAGCGCAAAGATTGCCATGCAGGGCTATCTCAATCACTTTTTGGGAAATATAACTATTGTTAACTCTCGAGAGGTTTGCAAGTTTCTGGGCGTATCAAAGTTATCCTTTTTACCTGAATATGGTTCCAAGCTACAGGAAGATTATGTGATGGTGATGCATCTGCCTAAAATTTCAAAGGATAATGATTCCAGAAAGTGTTGTTTGTCTGATTGTTTTCGTTGTTGTAATGATAACTGGCAAAAGGTTTGGGCAGTACTGAAACCTGGATTCTTGGCATTGCTAGCAGATCCTTTTGATGTACAGCCTTTAGACATTATTGCTTTTGATGTACTACCTTCCTCGGATGGGAATGAGGATCGTCGTCAATCCCTGGCACAAGAAATGGTGGATCGAAATCCCTTGCGCCATTCATTTAAGCCCCCCGAAGGATGGTGTCATCCCCACCGCTATGGTTCTTATGCTCCTCCAAGAGGCTTAATCAAAGATGGAAGTCAGGCCCAATGGTTTATAGATGGACGTGCCGCATTTGAGGCAATTGCTTCTTCAATCAAGGATGCAAAATCAGAGATATTTATTTGTGGCTGGTGGTTGTGCCCAGAACTGTATCTAAAGCGTCCTTTTCTTGCTCATGCTGTTTCAAGGCTTGATAATTTGCTGGAAGAAAGAGCTAAACAAGGGGTCCAGATTTTCGTTCTTATCTATAAAGAGGTAGCACTTGCTTTGAAAATCAACAGTTTTTATAGCAGGAGAAAGCTTCTAAGCATTCATGAGAATGTGAGGGTATTACGCTTTCCTGACCACTTTTCTACTGGTGTTTACTTGTGGGAATCTGAACCAAATTCATGGGAAGATGTGATGAAAGATGAACTGGACCGTGGAAAATACCCGCGTATGCCTTGGCATGATGTTCATTGTGCACTTTGGGGGCCACCTTGTCGAGACATAGCAAGGCACTTTGTTCAGAGATGGAATTATGCAAAGAGGAGCAAAGCTCCAAATGAGCAAGCCATACCGTTACTTATGCCTCGGCATCACATGGTTATTCCACATTACTTGGGAAAAAACACAGATGTGAAGAGTGAATACAAGAATACCGACTTCAACAGAATGATGAGGAGGGAAGACTCCTTTAGCTCAGCAACCGATGATATTCCTTTACTATTGCCTCAGGAGTCTGGTGGGCTCAATGCTTCTGAAGAAGAGCCGAGAAGTGGCTCAAACTCATTTTCATATCTGCGTGACCAGACTACTAGTAGGCTCAGCAGCGGTCTTTCTTTCTCTTTATGGAAGACCAAAGTTGAACCAATTAGTTCTGATACACCCATGAAGGGTTTTGTGGACAATCTTGATGCTGCACAAGTGCATCATCAAAGGAAATTGTCTCTGGAAAGGATGGCTCTGGATAGAATAGTTCTTGGTGATGTACAGAATTCAGATCTGGATTGGTATAAAAGATCAGGACAGGGTGAGCATGGAGGTTTTGCAGAAGACTCTGGACAAGTTGGCCCTCGTGTTTCATGTCGTTGTCAGGTTATTAGGAGTGTCGCTCAATGGTCAGCTGGAACAAGCCGAACTGAAGAGAGCATCCACAAGGCATATTGCTCTCTAATTGAGAAGGCAGAACACTTCATCTACATTGAGAATCAATTTTTCATCTCAGGTCTTTCACGGGAGGATGTAATACGAAATCGTGTGCTAGAAGCTTTATATCAACGGATTATGCGAGCATTCAACAATAAAAAGACCTTTAGGGTTATAATTGTCATACCCCTCCTTCCTGGCTTTCAGGGGGGCCTGGACGACAGTGGCGCAGCCTCTGTGAGAGCCATAATGCATTGGCAGTATAGAACTATCTGCCGAGGACAGAATTCTATATTACATAATTTGTATGAACTTCTTGGTTCAAAAATGCATGATTATATCTCTTTCTTCGGCCTCAGGTCATTTGGTAGACTTGGTGATAATGTTCCCTTGGTAACCAGCCAGGTCTATGTTCACAGTAAAATCATGATTATTGATGATTGTACATGTTTGATTGGATCTGCTAATATTAATGATAGGAGTTTACTTGGCTCCAGAGATTCTGAGATTGGTGTAGTTATAGAAGACAGAGAAATGGTTGATTCCTATATGGATGGAAAGCCTTGGAAAGCAGGAAAATTCTCCTTGACTCTCCGATTGTCACTATGGTCCGAGCATTTAGGCCTTGGAGCTGGAGAGTCCAAACAAATAATGGATCCAGTTGTTGACTCTACCTACAATGACATTTGGATGGCAAGGGCAAAGGAAAATACTCAAATTTACCAGGATGTGTTTTCTTGTGTTCCTAATGATGCAATACACAACAGGTAG 2874 0.4332 MESRINGGSGNSTHHYQQIQAEASTSSSFWQAPEPSRIFDELPEATIISVSRPDAADITPVLLSYTILFRYRQFKWQLVKKASQVFYLHFMLKKRAFVEEMHEKQEHVKEWLQNLGIGDLTALVHFDDEADDEVMPLSQQHHIHDESVKERDVPSSAALPVLRPALGTQEMTADSAKIAMQGYLNHFLGNITIVNSREVCKFLGVSKLSFLPEYGSKLQEDYVMVMHLPKISKDNDSRKCCLSDCFRCCNDNWQKVWAVLKPGFLALLADPFDVQPLDIIAFDVLPSSDGNEDRRQSLAQEMVDRNPLRHSFKPPEGWCHPHRYGSYAPPRGLIKDGSQAQWFIDGRAAFEAIASSIKDAKSEIFICGWWLCPELYLKRPFLAHAVSRLDNLLEERAKQGVQIFVLIYKEVALALKINSFYSRRKLLSIHENVRVLRFPDHFSTGVYLWESEPNSWEDVMKDELDRGKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRSKAPNEQAIPLLMPRHHMVIPHYLGKNTDVKSEYKNTDFNRMMRREDSFSSATDDIPLLLPQESGGLNASEEEPRSGSNSFSYLRDQTTSRLSSGLSFSLWKTKVEPISSDTPMKGFVDNLDAAQVHHQRKLSLERMALDRIVLGDVQNSDLDWYKRSGQGEHGGFAEDSGQVGPRVSCRCQVIRSVAQWSAGTSRTEESIHKAYCSLIEKAEHFIYIENQFFISGLSREDVIRNRVLEALYQRIMRAFNNKKTFRVIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLYELLGSKMHDYISFFGLRSFGRLGDNVPLVTSQVYVHSKIMIIDDCTCLIGSANINDRSLLGSRDSEIGVVIEDREMVDSYMDGKPWKAGKFSLTLRLSLWSEHLGLGAGESKQIMDPVVDSTYNDIWMARAKENTQIYQDVFSCVPNDAIHNR 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60416g00047 957 SMART pld_4 835 862 IPR001736 GO:0003824
Stsc60416g00047 957 PIRSF PLD_euk 450 546 IPR016555 GO:0004630|GO:0006654|GO:0048017
Stsc60416g00047 957 PIRSF PLD_euk 41 315 IPR016555 GO:0004630|GO:0006654|GO:0048017
Stsc60416g00047 957 PIRSF PLD_euk 311 452 IPR016555 GO:0004630|GO:0006654|GO:0048017
Stsc60416g00047 957 PIRSF PLD_euk 602 957 IPR016555 GO:0004630|GO:0006654|GO:0048017
Stsc60416g00047 957 Pfam PLD-like domain 708 884 IPR025202 -
Stsc60416g00047 957 Gene3D Endonuclease Chain A 440 519 - -
Stsc60416g00047 957 FunFam Phospholipase 669 889 - -
Stsc60416g00047 957 SUPERFAMILY Phospholipase D/nuclease 310 517 - -
Stsc60416g00047 957 Gene3D Endonuclease Chain A 667 895 - -
Stsc60416g00047 957 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 835 862 IPR001736 GO:0003824
Stsc60416g00047 957 MobiDBLite consensus disorder prediction 556 584 - -
Stsc60416g00047 957 SUPERFAMILY Phospholipase D/nuclease 676 886 - -
Stsc60416g00047 957 CDD PLDc_vPLD1_2_yPLD_like_2 695 879 - -
Stsc60416g00047 957 PANTHER PHOSPHOLIPASE D 450 943 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60416g00047 Stsc-Chr60416 239435 247198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60416g00047 1 914 Phospholipase D Gene Family (Wang group) AT3G16785 61.515 0.0 1117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60416g00047 K01115 - gmx:100780514 1423.68