Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60416g00045 ATGAATTCCAACCAAAACAAATCATCCCCTCTTTCACTCAACAACTACAATTTCGATTTCGATCTCGGCATCGGATNNNNNNNNNNCGACCAGAAAACCCCCAATTCCTCCGCCCCTTCCTACTCCTCCTATTCCTCCACCTCCACCGCCACTTCCTCTTCCCAACCCAGGCCCTCCTGGCAACCCGGCAAGCCCTCATGGTCCCACAAGCCCGCTTCCACTCCTGCCACTCAGTCTGGCCTCCCCGGTGGCCCCACTTCCATGGTCGGTGACATCTTCGGCAAGACCTGGGGTTCTACCCAACCTTCAGCTTCCGCCTCCGCCTCCACCGTCGGCATCATTAACAAAAACCCTAACCTTTTCGGAGACTTGGTCACCTCTGCGCTTGGCCAAGGTCCCAGGAACTCTGCCAATGTTCCTCTCAAAAACGCAACCCCTGCTTCCAAGCCTTCAGCTCCCGCCAGTTCCGCCTTTTCCATGGGAAAAATGGAAGATTCTTTGCCCAAAACTGCTAACACCACACAGACTAGTACAAATTGGGGATCCTCTGCCAATTTAGGGGGTTCTAGTACTGGCTACAGTGGTATCAATATGAATTCCAACAAAAGCCCGAATCTTGGGGGTCCTTCATTAAGAACTATGGGTGTTGGTGGTGGTGCTGCAGCTGGTAGTGGATTCAGTTCCAGTAACAATGATCCCTTTAGTTCTCTGTCTGGTATTGGATCAAAGCAATCTGGTGCTGCTACTCTTAATTCAGCTGCCAAATCCCAAAACAATGATTTGGGAGATGATGGTTTTGGAGATTTCCAGAATGCTTACAAGCCAAGCTCTGCAGATTTTCCGTCGACTGGTAATGTCGGAATTGACATTGATTTTGGTGGATCTTCCGCCTCGAATCAGAATCCGGTCCAGGGATCTGCTGGTGGTGCTGATCCAATGGACATGTTTTTCTCATCTTCCTCAGCCTCCGCCGGAGGCGCAGCTGCGGCTACATCTCAAGGATTTGGAGGACAGGCCTCTGCAGCAGTGGATGATTGGGGTCTGGATTCTGAGTTTGGTGGAGGCGGCCATGATGTGGGTGGCACAACCACTGAGCTTGAAGGGCTTCCCCCACCTCCTGCCGGGGTGTCTGGTGCCGCTGCCAAAGGCAAGGGGATGGACAATTACAAGCAGGGCCAGTTTGCTGATGCTATTAAGTGGCTTTCCTGGGCCGTCATCCTTCTAGAGAAAGCCGGGGATAACGCAGGCACTGTGGAGGTTTTGTCATGCAGGGCTTCCTGTTACAAAGAAGTTGGGGAGTATAAGAAGGCAGTGGCAGATTGTACAAAGGTTCTTGAAAATGATGAGAAAAATGTCTCCGTCCTTGTACAGCGTGCTCTCTTGTATGAGAGTATGGAAAAGTATAGACTTGGTGCTGAAGACCTGAGGACTGTGCTGAAGATTGATCCTGGGAACAGAGTTGCCAGAAGTACTGTTCACCGGTTGGCTAAGATGGCCGATTAG 1503 0.5096 MNSNQNKSSPLSLNNYNFDFDLGIGXXXXDQKTPNSSAPSYSSYSSTSTATSSSQPRPSWQPGKPSWSHKPASTPATQSGLPGGPTSMVGDIFGKTWGSTQPSASASASTVGIINKNPNLFGDLVTSALGQGPRNSANVPLKNATPASKPSAPASSAFSMGKMEDSLPKTANTTQTSTNWGSSANLGGSSTGYSGINMNSNKSPNLGGPSLRTMGVGGGAAAGSGFSSSNNDPFSSLSGIGSKQSGAATLNSAAKSQNNDLGDDGFGDFQNAYKPSSADFPSTGNVGIDIDFGGSSASNQNPVQGSAGGADPMDMFFSSSSASAGGAAAATSQGFGGQASAAVDDWGLDSEFGGGGHDVGGTTTELEGLPPPPAGVSGAAAKGKGMDNYKQGQFADAIKWLSWAVILLEKAGDNAGTVEVLSCRASCYKEVGEYKKAVADCTKVLENDEKNVSVLVQRALLYESMEKYRLGAEDLRTVLKIDPGNRVARSTVHRLAKMAD 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60416g00045 500 MobiDBLite consensus disorder prediction 1 101 - -
Stsc60416g00045 500 MobiDBLite consensus disorder prediction 30 84 - -
Stsc60416g00045 500 Pfam Tetratricopeptide repeat 425 451 IPR019734 GO:0005515
Stsc60416g00045 500 MobiDBLite consensus disorder prediction 126 155 - -
Stsc60416g00045 500 MobiDBLite consensus disorder prediction 126 315 - -
Stsc60416g00045 500 SUPERFAMILY TPR-like 380 490 IPR011990 GO:0005515
Stsc60416g00045 500 MobiDBLite consensus disorder prediction 292 306 - -
Stsc60416g00045 500 MobiDBLite consensus disorder prediction 166 208 - -
Stsc60416g00045 500 MobiDBLite consensus disorder prediction 1 16 - -
Stsc60416g00045 500 Gene3D Tetratricopeptide repeat domain 377 499 IPR011990 GO:0005515
Stsc60416g00045 500 PANTHER OS03G0340700 PROTEIN 1 500 - -
Stsc60416g00045 500 MobiDBLite consensus disorder prediction 346 382 - -
Stsc60416g00045 500 SMART tpr_5 378 411 IPR019734 GO:0005515
Stsc60416g00045 500 SMART tpr_5 418 451 IPR019734 GO:0005515
Stsc60416g00045 500 SMART tpr_5 452 485 IPR019734 GO:0005515
Stsc60416g00045 500 MobiDBLite consensus disorder prediction 223 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60416g00045 Stsc-Chr60416 233375 236037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60416g00045 393 495 Calmodulin-binding Proteins AT3G25230 31.132 7.74e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60416g00045 - - pcin:129293443 552.362