Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60416g00039 ATGGCGGGTGATCATCATTTCAGCACCACGGATGATAAGAAGAAGAAGAAGAAGATCGCCATTGTCACCGTCTCTTCCATTCTCCTCGTCGCTATGGTTGGTTGCGTTGCCGTGGGAATTGACATGACTGCCGTCGAAGAACAAGAAACCAGCACCAACACCATCGTCAAGAACCAGAGGAACGTCCACGTCATCTGCCAATCCGCCGAGTACAAAGAAACATGCGAGAAGAGTCTCGAGAAAGCCACCAACAACGGCACCACCGACACCAAAGAGCTCATCATTGCCGCCTTCAACGCCACCGCCGAGGAAATCGAGACTCAGATCAGCGACTCCACTCTCTACCAGAAATTGGTGACGGACGACATGAGCAAACAGGCCTTGGATATTTGCAAGGAGGTTCTTGGTTACGCCGTTGAAGATATCCACAGATCCGTTCACATGATGGAGAGGTTCGAGATGAGCAAGATCCCTCAGTACGCTTACGACCTCAAGATCTGGATCGCCGGTACCCTGGCTCACCAGGAAACTTGCTTGGAAGCGTTCCAGCACGTTCCAACGGAAGCCGGGAAGGAGATGGCTAAGGTTTTGAACACGTCTCTCCAGCTAAGCAGCAACGCCTTGGATATCATCAATGGCGCCACCAAGATCTACAAGAGCTTCAACTTGGATAACTTCTTTAAGGGTAGTGATGGCCATGGCGAGGCCCCTGCTCCAGTCCCTACAGCCGCAGGCAGGAAGCTTCTCTCTGATATAGATGATGAGGGTTTGCATTCCTGGATTGAGCTCGGCAGTAGGAATCTTGTCGAAGCGGAGAACTGGGAAGACCCGGCTCTTCTGAAACCCGATTGTGTTGTGGCTCAGGACGGCACCGGAAACTTCAAGACTGTCACGGAGGCCCTCGCGACTGTCCCTAAGAACAACCACAAGCGTTTCGTGATCTATGTCAAGCAAGGTGTTTATACCGAGTATGTTAGCTTGGAGAAGTCCATGTCTCACGTCACCATTGTTGGAGATGGCCCCACAAAGACGAGATTCACCGGGAGCAAGAACTATGTTGATGGCCTTCAGACCTACTACACTTCAACTTTCAGTGTGAATGCTGCTAACTTCATGGCCGTAAATGTTGGGTTCGAGAACACCGCAGGAGCTTCCAAGCACCAAGCGGTGGCACTTCGTGTGACAGCAGATCAAGCAGTGTTCTACAAATGCCACATGGATGGATACCAAGACACGCTATACGTGCAATCACAGAGGCAGTACTTCCGCGACTGCACCGTCTCGGGCACCATCGACTTCATCTTTGGCGACGCAGCAGCCGTCTTCCAAAACTGCACCTTCATTGTCAGGAAGCCAATGGAAACTCAACAATGCATGGTCACTGCCGGTGGAAGGACCAAGATTGATAGCCCAACCGCACTGGTGTTCCAGGACTGCTACTTCACTGGCACACCGGAGTTGACGAGCATGCCCCGCAAGCTTTCTTATCTCGGAAGGCCATGGAAGATATTCTCAAAGGTTGTGATAATGGACTCTGAGATTGAAGATATATTCGTTCCAGAAGGGTACATGCCGTGGATGGGGTCAGCGTTCAAGGAAACAAGCACATACCTTGAATACAACAACAGGGGACCTGGTGCTTCAACAAGGAATAGAATCACATGGCCTGGTTTCAAGGTCCTCAACTCTATTGAGGCTGATCAATACTACCCGGGAAAATTCTATGAGATGTCTAACCATAGTGAGCGTGATGCTTGGATCATTGACTCCGGGGTACCCTACAATCTCGCCCCACAAACCTCCCTCAAACTTACATCCATGAATATCCCTAACTTGCTTTAA 1842 0.5054 MAGDHHFSTTDDKKKKKKIAIVTVSSILLVAMVGCVAVGIDMTAVEEQETSTNTIVKNQRNVHVICQSAEYKETCEKSLEKATNNGTTDTKELIIAAFNATAEEIETQISDSTLYQKLVTDDMSKQALDICKEVLGYAVEDIHRSVHMMERFEMSKIPQYAYDLKIWIAGTLAHQETCLEAFQHVPTEAGKEMAKVLNTSLQLSSNALDIINGATKIYKSFNLDNFFKGSDGHGEAPAPVPTAAGRKLLSDIDDEGLHSWIELGSRNLVEAENWEDPALLKPDCVVAQDGTGNFKTVTEALATVPKNNHKRFVIYVKQGVYTEYVSLEKSMSHVTIVGDGPTKTRFTGSKNYVDGLQTYYTSTFSVNAANFMAVNVGFENTAGASKHQAVALRVTADQAVFYKCHMDGYQDTLYVQSQRQYFRDCTVSGTIDFIFGDAAAVFQNCTFIVRKPMETQQCMVTAGGRTKIDSPTALVFQDCYFTGTPELTSMPRKLSYLGRPWKIFSKVVIMDSEIEDIFVPEGYMPWMGSAFKETSTYLEYNNRGPGASTRNRITWPGFKVLNSIEADQYYPGKFYEMSNHSERDAWIIDSGVPYNLAPQTSLKLTSMNIPNLL 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60416g00039 613 CDD PMEI-like_3 65 216 - -
Stsc60416g00039 613 PANTHER PECTINESTERASE 24 587 - -
Stsc60416g00039 613 Pfam Pectinesterase 283 575 IPR000070 GO:0030599|GO:0042545
Stsc60416g00039 613 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 212 IPR035513 -
Stsc60416g00039 613 FunFam Pectinesterase 4 280 598 - -
Stsc60416g00039 613 Pfam Plant invertase/pectin methylesterase inhibitor 62 210 IPR006501 GO:0004857
Stsc60416g00039 613 NCBIfam pectinesterase inhibitor domain 51 213 IPR006501 GO:0004857
Stsc60416g00039 613 ProSitePatterns Pectinesterase signature 2. 427 436 IPR033131 -
Stsc60416g00039 613 FunFam Pectinesterase 58 215 - -
Stsc60416g00039 613 Gene3D Invertase/pectin methylesterase inhibitor family protein 59 213 IPR035513 -
Stsc60416g00039 613 SMART PMEI_2 57 210 IPR006501 GO:0004857
Stsc60416g00039 613 Gene3D - 280 598 IPR012334 -
Stsc60416g00039 613 SUPERFAMILY Pectin lyase-like 281 575 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60416g00039 Stsc-Chr60416 206788 208668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60416g00039 11 594 Carbohydrate Esterase AT3G05610 41.126 3.79e-165 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60416g00039 K01051 - gmx:100800194 778.089