Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60416g00038 ATGGAGAATGGCAATGGAAATTTTAAGAGCACCTACGATGTCAACAGCAAGATAATGTTGATCTCCATCTTCATTGTCTCCATTGTCCTCATCACAATGATATGCTTCTACATCTACGCCCGTTTGCACCTCCGCAACACTCGCCAACTCCAACGCAATAATCATAGCATCCGTGGCCACCACCACCACCCTCACTTCGTATTCTACGTCAACCCCGCCCTCATGTTGGCCTCCCGCGGCCTCAACGCCTCCGTGATTGCCTCCCTTCCAGTCTTCACTTTCTCCCGCAAGACCCACCCTGACGCCGTGGACTGCCCCGTTTGCCTCTCGGAGTTCGAGGAAGGGGAAACGGGTCGGATCTTGCCCGCGTGCAAGCACAGCTTCCACACCGAATGCATCGATATGTGGCTCCAGTCCCACTCCACGTGCCCAGTTTGCAGGGCACCCGTGGAGCCTCCGAAAGAACCCGAGGTGGTTATAAGTGTGTGCGAGTCTGAACCGGGTTCGAGCTCCCAAGGAGATGATGGGGTCATCGTCCCAAAGGATTCTTCGTCCGTTGTGAATGTGAGCGTTGATGTGCCCGCAAGAAACGAAGATTGTGGTTGTGAGTCAGCATCGTCTTCGTCGTCGTTCCGGTCGCCGGTGGGTCGCATGGTGTCGTTGAAGAGGATCCTGAGCAGAGAGAAGAAAACGAGTGAGGAAGGTGTATGTACGGTTTGA 720 0.5444 MENGNGNFKSTYDVNSKIMLISIFIVSIVLITMICFYIYARLHLRNTRQLQRNNHSIRGHHHHPHFVFYVNPALMLASRGLNASVIASLPVFTFSRKTHPDAVDCPVCLSEFEEGETGRILPACKHSFHTECIDMWLQSHSTCPVCRAPVEPPKEPEVVISVCESEPGSSSQGDDGVIVPKDSSSVVNVSVDVPARNEDCGCESASSSSSFRSPVGRMVSLKRILSREKKTSEEGVCTV 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60416g00038 239 CDD RING-H2_EL5-like 104 147 - -
Stsc60416g00038 239 PANTHER RING-H2 FINGER PROTEIN ATL16 18 197 IPR044600 GO:0016567|GO:0016740
Stsc60416g00038 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 153 IPR013083 -
Stsc60416g00038 239 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Stsc60416g00038 239 Pfam Ring finger domain 104 147 IPR001841 -
Stsc60416g00038 239 SMART ring_2 105 146 IPR001841 -
Stsc60416g00038 239 SUPERFAMILY RING/U-box 85 153 - -
Stsc60416g00038 239 FunFam E3 ubiquitin-protein ligase ATL6 71 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60416g00038 Stsc-Chr60416 201827 202990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60416g00038 2 232 Rapid Response to Elicitors AT3G16720 39.231 1.96e-50 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60416g00038 - - aip:107638764 327.405