Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60416g00005 ATGTTTCACTCTAAGCATCAATCTCTCACAAGATCTCTTCTCTTCTTCCTCAACCACGCTTCCCCTCTTCCACCTCCATCCACAAAACCTTACCTTCTTCTTCTCCCACACACATCACTCTTCTCAACCACCTCCACTTCCGATGACCACCACTCTTTCACGGTCTCCTACCTCACCACCAAGTGCGGATTCTCCCATGAAGACGCCCTCAAAGCACACAAGCGCGTTCGCTTCGATTCCCCCCTCAAGCCAGATTCCGTCATCTCCTTCTTCAGAGACCAAGGTTTCTCTATCTCCCAAATCACCACCATCCTCTGCCGGATCCCCATGTTCCTGACATACGACCCCAACAAATCAATCTTGCCAAAGTTTCAATTTTTAGCATCCAAAGGTGCTTCTCCCTCTGACATTGTTATCATGACCACAAGGTGTCCCCGCTTCCTGCTTCGAAGCCTCGACCACATGGTACCCTTGTACCAATTGCTCAGAAGGTTCTGCCCCTCTGATCTCAAAACCATTGCTTATATATCTGCATGCCCATCTTCCATTACTGATTTTCGTGTGTCTCAAAATGTAAACTTGCTGCTTGAAGAAGGGTTGACCAATGCCAATATCCACCATTTGCTTAGAACTAGGCCTTCTGTGCTGTGCTCTACTGATTTGAAGAAAACAGTTGAGGAAGTGAAGCAATTAGGGTTTGATCCCTCTCAGTCTTATTTCAGTGTGGTGTTGCTGACCAAAAAGGCTATAACTAGGTCTCGATGGGATGCTAAAGTTGAAGTCCTTAAGAAATGGGGCTGGTCTGAGCAAGATTTTGAGGAGGCCTTTAGGAGGCACCCTCATTTTATGCTGAGATCTCAGGAGAAACTCAATGCAGTGATGAGCCTTTGGATCAGTAAGTTTGGGTGGGATGGTATGCTGCTTTGCATGAGACCGATGCTTTTCGGATACAGTTTGGAGAAGAGGCTTATTCCTAGAGCTAAGGTTGTCAAGTATCTTCTCTCCAAAGGTTTGATGAAGAAGAATGCTAGCATAATCACACCATTTTCTGTGAAAGAGGATATGTTCCTCAAGAAGTTTGTCATTTGTTTTAATGAGAAAGATAGGTCTCACCTATTAAAGTTATATCAGGGAGGATGTTAG 1143 0.4514 MFHSKHQSLTRSLLFFLNHASPLPPPSTKPYLLLLPHTSLFSTTSTSDDHHSFTVSYLTTKCGFSHEDALKAHKRVRFDSPLKPDSVISFFRDQGFSISQITTILCRIPMFLTYDPNKSILPKFQFLASKGASPSDIVIMTTRCPRFLLRSLDHMVPLYQLLRRFCPSDLKTIAYISACPSSITDFRVSQNVNLLLEEGLTNANIHHLLRTRPSVLCSTDLKKTVEEVKQLGFDPSQSYFSVVLLTKKAITRSRWDAKVEVLKKWGWSEQDFEEAFRRHPHFMLRSQEKLNAVMSLWISKFGWDGMLLCMRPMLFGYSLEKRLIPRAKVVKYLLSKGLMKKNASIITPFSVKEDMFLKKFVICFNEKDRSHLLKLYQGGC 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60416g00005 380 PANTHER CGI-12 PROTEIN-RELATED 50 363 IPR003690 GO:0003690|GO:0006355
Stsc60416g00005 380 SMART mt_12 102 133 IPR003690 GO:0003690|GO:0006355
Stsc60416g00005 380 SMART mt_12 206 234 IPR003690 GO:0003690|GO:0006355
Stsc60416g00005 380 SMART mt_12 273 304 IPR003690 GO:0003690|GO:0006355
Stsc60416g00005 380 SMART mt_12 305 339 IPR003690 GO:0003690|GO:0006355
Stsc60416g00005 380 Gene3D Transcription termination factor 3, mitochondrial 174 367 IPR038538 -
Stsc60416g00005 380 Pfam mTERF 88 234 IPR003690 GO:0003690|GO:0006355
Stsc60416g00005 380 Pfam mTERF 256 356 IPR003690 GO:0003690|GO:0006355
Stsc60416g00005 380 FunFam Mitochondrial transcription termination factor-like 151 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60416g00005 Stsc-Chr60416 36468 37715 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc60416g00005 mTERF 7.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60416g00005 K15031 - gmx:102666739 330.102