Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60416g00004 ATGGATGAGATTGGAGGGAGCAGTAGTGCCGAAGGAGGCATGAAGGAACAAGATCGGTTTGTGCCAATAGCGAACGTTGGTAGAATCATGAAGCAGATTCTTCCCCAGAACGCTAAAGTGTCGAAGGAAGCGAAGGAGACGATGCAAGAGTGCGTGTCGGAGTTCATCAGCTTCGTGACGAGCGAGGCTTCGGACAAGTGCCGCAAGGAGAGGAGGAAGACAGTCAATGGAGATGACGTTTGCTGGGCTTTGGCTTCTCTTGGTTTCGATGATTATGCTCTTCCAATCCGCAGGTATTTGCAGAGGTATCGAGAACTTGATGATGATGAGCAGAAACCTGAAGCGGAGACTTCCAAGCTTCTCTATATCCAATACAAGAAGGCCATTGAAGATTACATTACTTCCAAGGTTCTTCCATCTTTGAGAGGAAAGAAAGATGAAGTTCTGTTGAGAGAACTGCTCAGAAGATGGTCCAATCACAAAAATATGACTTTCTGGCTCTTAAGATTCTTTGGTTATCTTGACAGATACTATCTCCCCAGATTTGGCCATCATTCTATTGAAGAAACAAGTTTGCTCTCTTTCTTTGACTTGGTATTTGATGATGAGATGAATCAACAAGTAGGGGATGCTATATTATCTATGATTGATAGAGAACGTGCAGGAGAGAAGGTGGATTGGGAATTGATTAACAACATTGTGGCTATCCACTCACAGATTGGAGATAGATCAACCAAAAGCTACACACAAGGATTTGTCGAAAGATTGGTTAAAGACAATGCTGCATTCTATTCTGATGCAGTTTCAAATTGGATAGCAACCTCTTCCTTCAAGTTTAACACACCAAAGGAAGAGAAATTAGAAGATGAGAATCCAATAGTTTCATCAAAGAGAATAATAAAATTGGTGAGTTCTGATGGAGATGTGTTTGAAGTTGAGTATGAAGTTGCACTTGTGTCACAAACAATTGAAGATCTCATCAAGGCTGATCCTGCTGCTGCCAGTGATGAAATTCCAATTTCTGCAGTGAAAAGCAAAACACTGAAGAAGGTCATTGAATATTGCAAGAAGCACAGTGAATATGAATCTGCAAGTTCATCATCACTGGAGGAGTGGGATGCTGAATTCTTGAAGGTTGACCAACCTGAGAAACTGTTTGACCTTGTTTTAGCTTCAAACTACTTAAACATCGAGAGTCTTCTGAACCTGACAACCAATCAAATAGGAAACATGATGAAAGGGAAGAGTCCAAGTGAAATCCGGAAGATCTTCAACATTAAGGAAGAATTAAGCACTCAGGAACAAGAGATTGAGAATAGATACAACAACCATGCACTACAATAA 1344 0.41 MDEIGGSSSAEGGMKEQDRFVPIANVGRIMKQILPQNAKVSKEAKETMQECVSEFISFVTSEASDKCRKERRKTVNGDDVCWALASLGFDDYALPIRRYLQRYRELDDDEQKPEAETSKLLYIQYKKAIEDYITSKVLPSLRGKKDEVLLRELLRRWSNHKNMTFWLLRFFGYLDRYYLPRFGHHSIEETSLLSFFDLVFDDEMNQQVGDAILSMIDRERAGEKVDWELINNIVAIHSQIGDRSTKSYTQGFVERLVKDNAAFYSDAVSNWIATSSFKFNTPKEEKLEDENPIVSSKRIIKLVSSDGDVFEVEYEVALVSQTIEDLIKADPAAASDEIPISAVKSKTLKKVIEYCKKHSEYESASSSSLEEWDAEFLKVDQPEKLFDLVLASNYLNIESLLNLTTNQIGNMMKGKSPSEIRKIFNIKEELSTQEQEIENRYNNHALQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60416g00004 447 FunFam Protein CBG09126 297 444 - -
Stsc60416g00004 447 Pfam Skp1 family, tetramerisation domain 299 359 IPR016073 GO:0006511
Stsc60416g00004 447 SMART skp1_3 297 397 IPR001232 GO:0006511
Stsc60416g00004 447 Coils Coil 427 447 - -
Stsc60416g00004 447 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 20 84 IPR003958 -
Stsc60416g00004 447 Pfam Cullin family 116 294 IPR001373 GO:0006511|GO:0031625
Stsc60416g00004 447 SUPERFAMILY Cullin repeat-like 116 277 IPR016159 -
Stsc60416g00004 447 Gene3D Cullin Repeats 199 297 - -
Stsc60416g00004 447 Pfam Skp1 family, dimerisation domain 399 439 IPR016072 GO:0006511
Stsc60416g00004 447 Gene3D Histone, subunit A 11 105 IPR009072 GO:0046982
Stsc60416g00004 447 SUPERFAMILY Skp1 dimerisation domain-like 369 436 IPR036296 GO:0006511
Stsc60416g00004 447 Gene3D Potassium Channel Kv1.1; Chain A 298 446 IPR011333 -
Stsc60416g00004 447 PRINTS CCAAT-binding transcription factor subunit A signature 48 66 - -
Stsc60416g00004 447 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Stsc60416g00004 447 PRINTS CCAAT-binding transcription factor subunit A signature 67 85 - -
Stsc60416g00004 447 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 116 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc60416g00004 447 SUPERFAMILY Histone-fold 17 115 IPR009072 GO:0046982
Stsc60416g00004 447 CDD BTB_POZ_SKP1 299 412 - -
Stsc60416g00004 447 ProSitePatterns NF-YB/HAP3 subunit signature. 51 67 IPR003956 GO:0005634|GO:0006355|GO:0043565
Stsc60416g00004 447 Gene3D Cullin Repeats 107 197 - -
Stsc60416g00004 447 SUPERFAMILY POZ domain 298 361 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60416g00004 Stsc-Chr60416 25021 29755 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60416g00004 14 110 CCAAT-HAP3 Transcription Factor Family AT2G47810 77.320 2.07e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc60416g00004 Cullin 3.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60416g00004 K08065 - ahf:112704153 504.212