Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc603g00004 ATGGTTTCATCCCTTCAGTTTCTCACTTTCTTCCAAAGCTTCTCAGCTCGGGTTCTTCTCAGATTCTACATCACTCGGACAGCTTATCATTCTGCTTCAGTAATGGAGGTGTTCAAAGCTGTTGCCAAGAATGAACTTGCAACTCATGGAAGTGTTGCTATCAGAGCTGACCAGAATAGTTATAGTTACAAGCAACTAATCTTGTCTGCACAGAAGATATCTAATATATTGTGTGGCAGCGACATAAAGACAGGAAACCTTGGTGGAGCTCGGATAGGAATTGTAGCTAAACCCTCTGCCGAATTTGTAGCTGGAATACTTGGGACTTGGTTTAGTGGAGGTGTTGCTGTTCCACTTGCACTCAGCTATCCAGAACCAGAGCTTTTACATGTGATTCATAATTCGGATGTGTCAACAATACTGAGTACTGAAGATCATAGTGAATTAATGCAAGGCCTTGCCAATAAAACTTCTTCTCAGTTTTTTCATCTCCCACCTGTTCTCACTAAGTCCTCAGGGAAAAGCAGGGATGAAGATTCACAAAATGGGGAAATTGATGTTGATAGAATTTTCCAGGACAATATTGAAAAACCAAGTGAAGATCCAGCACTGATTTTGTACACTAGTGGGACAACAGGTAAACCTAAGGGAGTGGTTCATACTCACAGAAGCATTGCTGCTCAGGTCCAAACCTTAGCAAATGCATGGGAGTATACATCTGCTGACAAGTTTCTACACTGTCTACCATTGCATCATGTTCATGGACTTTTCAATGCTTTATTCGCCCCTCTCTATGCAGGATCCTCGGTTGAATTTATGCCAAAATTTAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAGTCATATCCATCTGAAGGATCTAAGGCTGATGACGCTATAACTGTTTTCACTGGAGTTCCAACTATGTACACCCGGTTGATACAAGGTTATCATGCAATGGATCCTGAGCTACAAGCCACCTCAGCATCTGCTGCACGGAACTTGCGTCTTATGATGTGTGGATCCTCTGCACTCCCTCAACCTGTTATGCAAGAATGGGAAGCCATCACTGGGCATCGCTTATTGGAGCGATATGGCATGACTGAATTTGTCATGGCATTGTCGAATCCTTTGAAAGGCGAGCGTAAACCAGGCACTGTTGGCAAACCATTTCCTGGTATAGAGGTCAAGATCCTTGTAGATGAGGACAGTGGAAAAGACAAGACTAAAGTGGGGGAGCTTTGTGTTAAAAGCCCTTCATCCTTTAAAGAATATTGGAAACTTCCAGAGATAACAAAAGAATCATTTACTGAAGATGGATTTTTTAAGACTGGGGATGCAGTTACTACAGATGAAGATGGATACTACATCATTCTAGGACGTACTAATGCTGATATAATCAAGGCTGGTGGCTACAAACTATCTGCCTTAGAAATTGAATCAGTTATACTAGAGCATCAAGCTGTCTCGGAATGCTGCGTTTTGGGCTTACCCGATAAAGATTATGGGGAAGTTGTCGGTGCAATTATCGTACCAGAGGCTGATGTCAAGAGAAAGCGAGATGAAGAGTCAAAGCCTGTTCTAAGCCTGGAAGAGTTATCCACCTGGGCCAAAGACAAAATTGCACCTTACAAGATACCAACTAAACTTTTCGTTTGGGACTCACTCCCTCGCAATGCAATGGGGAAGGTAAATAAAAAGGAGCTGAAGAAAATTTTGGCTTCAGAACAGTAG 1734 0.4262 MVSSLQFLTFFQSFSARVLLRFYITRTAYHSASVMEVFKAVAKNELATHGSVAIRADQNSYSYKQLILSAQKISNILCGSDIKTGNLGGARIGIVAKPSAEFVAGILGTWFSGGVAVPLALSYPEPELLHVIHNSDVSTILSTEDHSELMQGLANKTSSQFFHLPPVLTKSSGKSRDEDSQNGEIDVDRIFQDNIEKPSEDPALILYTSGTTGKPKGVVHTHRSIAAQVQTLANAWEYTSADKFLHCLPLHHVHGLFNALFAPLYAGSSVEFMPKFSVRGIWQRWRESYPSEGSKADDAITVFTGVPTMYTRLIQGYHAMDPELQATSASAARNLRLMMCGSSALPQPVMQEWEAITGHRLLERYGMTEFVMALSNPLKGERKPGTVGKPFPGIEVKILVDEDSGKDKTKVGELCVKSPSSFKEYWKLPEITKESFTEDGFFKTGDAVTTDEDGYYIILGRTNADIIKAGGYKLSALEIESVILEHQAVSECCVLGLPDKDYGEVVGAIIVPEADVKRKRDEESKPVLSLEELSTWAKDKIAPYKIPTKLFVWDSLPRNAMGKVNKKELKKILASEQ 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc603g00004 577 Pfam AMP-binding enzyme C-terminal domain 478 563 IPR025110 -
Stsc603g00004 577 Gene3D - 464 577 IPR045851 -
Stsc603g00004 577 FunFam Acyl-CoA synthetase family member 3 43 461 - -
Stsc603g00004 577 SUPERFAMILY Acetyl-CoA synthetase-like 18 575 - -
Stsc603g00004 577 Pfam AMP-binding enzyme 48 467 IPR000873 -
Stsc603g00004 577 Gene3D - 38 461 IPR042099 -
Stsc603g00004 577 PRINTS AMP-binding signature 200 211 IPR020459 -
Stsc603g00004 577 PRINTS AMP-binding signature 212 220 IPR020459 -
Stsc603g00004 577 PANTHER ACYL-COA SYNTHETASE 48 573 - -
Stsc603g00004 577 CDD MCS 51 571 - -
Stsc603g00004 577 ProSitePatterns Putative AMP-binding domain signature. 205 216 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc603g00004 Stsc-Chr603 7474 13900 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc603g00004 200 575 Monolignol Biosynthesis Gene Families AT4G19010 29.049 9.34e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc603g00004 K18660 - gmx:100813324 932.554