Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc601g00002 ATGGGTATGTCTGCTGCTCCACAGTTCCATGTTTTGGCGGTTGATGACAGCCTAATTGATAGAATGCTCATTGAGAGGCTCCTTAAAACCTCTTCATTTCATGTTACTACAGTGGACTCTGCTGTTAAGGCTTTACAATACCTTGGTTTGGTTGAAGATAAACTAAGGAGTTATCACACTACTTCTGAAATTCATCAGGATGTGGAAGTTAATGTAAGTCTGATCATAACAGATTACTGTATGCCAGAAATGACTGGCTATGATCTGCTAAGAAAAATCAAGGAATCAAATTATCTTAAAGACATACCAGTTGTAATCATGTCTTCCGAGAATGTTCCATCAAGGATCAATAGATGCTTGGAAGATGGGGCTGAAGAATTTTTTCTGAAACCAGTTCAACAATCAGATGTGAACAAGCTCAAGCCCCATTTATTGAAATCAAGAGCTAAGGAAGAAGAGGAGGAAACCCAACCCATCAACAACAATAATAAGAGGAAAAGCATGGTTGAAAGCCATTGCCCAGATAAAACAAGAATTAAGTGTACCATTTAA 552 0.3804 MGMSAAPQFHVLAVDDSLIDRMLIERLLKTSSFHVTTVDSAVKALQYLGLVEDKLRSYHTTSEIHQDVEVNVSLIITDYCMPEMTGYDLLRKIKESNYLKDIPVVIMSSENVPSRINRCLEDGAEEFFLKPVQQSDVNKLKPHLLKSRAKEEEEETQPINNNNKRKSMVESHCPDKTRIKCTI 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc601g00002 183 ProSiteProfiles Response regulatory domain profile. 10 145 IPR001789 GO:0000160
Stsc601g00002 183 MobiDBLite consensus disorder prediction 146 160 - -
Stsc601g00002 183 MobiDBLite consensus disorder prediction 146 176 - -
Stsc601g00002 183 SUPERFAMILY CheY-like 8 153 IPR011006 -
Stsc601g00002 183 Gene3D - 10 178 - -
Stsc601g00002 183 SMART REC_2 9 144 IPR001789 GO:0000160
Stsc601g00002 183 CDD REC_typeA_ARR 11 140 - -
Stsc601g00002 183 Pfam Response regulator receiver domain 11 137 IPR001789 GO:0000160
Stsc601g00002 183 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 167 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc601g00002 Stsc-Chr601 17888 20133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc601g00002 1 183 Response Regulator Gene Family AT3G57040 57.895 2.14e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc601g00002 Response_reg 1.7e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc601g00002 K14492 - gmx:100787436 274.248