Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc5g00056 ATGGGCGCAAATTCGTTGCCATCCGAGTCGACTCATGATCTCGACGAGCAGATCTCGCAGCTCATGCAGTGCAAGCCACTTTCCGAGCAACAGGTTAGAGTTTTATGTGAGAAGGCTAAGGAGATTTTAATGGATGAAAGTAATGTCCAGCCTGTGAAAAGCCCTGTGACAATTTGTGGCGATATTCATGGGCAGTTTCATGATCTTGCTGAACTATTTCGGATTGGAGGGAAGTGTCCAGATACGAATTACTTGTTTATGGGTGATTATGTGGACCGAGGATATTATTCAGTTGAAACTGTAACGCTGCTTGTTGCACTGAAAGTGCGGTATCCTCAACGAATAACCATTCTTAGGGGAAACCATGAAAGCCGTCAGATCACTCAAGTATATGGATTTTATGATGAGTGCCTTAGAAAGTATGGTAGTGCTAATGTGTGGAAGATATTTACAGACCTTTTTGATTTTTTTCCACTGACTGCATTGGTGGAGTCTGAAATATTCTGTCTGCATGGTGGACTTTCACCTTCAATTGAGACCCTTGATAACATACGGAGCTTTGATCGTGTTCAAGAGGTACCTCATGAAGGGGCCATGTGTGATCTTTTGTGGTCTGATCCAGATGACAGGTGTGGCTGGGGAATTTCTCCACGAGGTGCTGGATATACTTTTGGCCAGGATATATCTGAACAATTTAATCACACAAACAGTCTTAAGTTGATTGCTAGAGCTCATCAGCTGGTTATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACAATTTTCAGTGCACCCAACTACTGTTACCGATGCGGGAACATGGCTTCCATATTGGAGGTTGATGNNNNNNNNNNTCTATCACACACAACTTGTTTACTGTTGCTATGCTTGGTTAAATGTTATTGA 912 0.4221 MGANSLPSESTHDLDEQISQLMQCKPLSEQQVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRSFDRVQEVPHEGAMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDXXXXLSHTTCLLLLCLVKCY 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc5g00056 303 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Stsc5g00056 303 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Stsc5g00056 303 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Stsc5g00056 303 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Stsc5g00056 303 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Stsc5g00056 303 PRINTS Serine/threonine phosphatase family signature 152 178 IPR006186 GO:0016787
Stsc5g00056 303 PRINTS Serine/threonine phosphatase family signature 181 208 IPR006186 GO:0016787
Stsc5g00056 303 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 12 285 IPR047129 GO:0004722
Stsc5g00056 303 CDD MPP_PP2A_PP4_PP6 13 283 - -
Stsc5g00056 303 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
Stsc5g00056 303 Pfam Calcineurin-like phosphoesterase 55 246 IPR004843 GO:0016787
Stsc5g00056 303 SMART pp2a_7 27 297 IPR006186 GO:0016787
Stsc5g00056 303 FunFam Serine/threonine-protein phosphatase 7 292 - -
Stsc5g00056 303 Gene3D - 7 293 IPR029052 -
Stsc5g00056 303 SUPERFAMILY Metallo-dependent phosphatases 9 284 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc5g00056 Stsc-Chr5 326324 330700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc5g00056 19 243 Calmodulin-binding Proteins AT5G63870 34.457 7.44e-33 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc5g00056 K04382 - thj:104821037 574.704