Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc5g00051 ATGGCTTCAAGATTTTGGACCCAGGGTGCTAGCGATTCTGAGGATGAAAGCAGTGACTATGATGAGGTTGATGAGACGACGGCTGCTGAGGTAGACACCACTACCAAACAGAGCAGGTATTTGACAACTGAGTTGAGTGATAGTGATGACTCCGATAGCCAACGGCGCGTCGTCCGGTCGGCAAAGGATAAGAGATTTGAGGAGATGGCTTCTACTGTTGATCAGATGAAGAATGCCATGAAGATAAATGATTGGGTGAGCTTGCAGGAGAGCTTTGACAAGATCAACAAGCAGCTCGAGAAGGTCATGCGTGTTACTGAGTCTGAGAAGGTTCCCAATCTGTACATCAAGGCCCTGGTGATGTTGGAGGACTTTTTGGCTCAGGCTTTGGCCAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCTAAGGCTTTGAACTCGATGAAGCAGAAGTTGAAGAAGAATAATAAGCAGTATGAGGAACTGATTAACAAATGCAGGGAGAGCCCTGAGAGTGAGGAGGAGAAAGAAGAGGAGGAATCCGAGGAAGAGTATGAGAGTGATGGTGAGATTATTGAGCCGGATCAGCTCAAAGGAAGAGATGACCTGAAATCAGATTCGGAAGTTTCTCACTATGACGACGAAAAGGGTGATGCTGGTGAAGGACCCTGGGACCAAAAACTTAGCAAGAAGGACAGGCTTATGGATAGGCAATTCATGAAAGACCCTAGTGAGATCACTTGGGACACAGTCAACAAGAAATTCAAGGAGGTTGTGGCAGCAAGAGGCAGAAAGGGAACTGGAAGGTTTGAGCAGGTTGAGCAGCTTACTTTCCTTACAAAAGTTGCTAAAACACCTGCACAGAAGCTGGAGATCCTTTTTAGTGTGGTATCTGCCCAGTTTGACGTTAACCCTGGCCTAAGTGGTCACATGCCCATTAATGTTTGGAAAAAGTGTGTGAATAACATGCTGATCATTCTTGACATTTTAGTGCAATATCCTAACATAGTTGTTGATGATGCTGTGGAGCCGGATGAGAATGAAACTCAGAAGGGTCCTGACCATAATGGGCCGATTCGCATTTGGGGAAATTTGGTGGCTTTCCTGGAAAGAATAGATGCTGAGTTTTTCAAGAGTTTGCAGTGCATAGATCCGCATACCCGTGAGTATGTTGAGAGGCTCAGGGATGAGCCAATGTTTCTTGTTCTTGCTCAGAATGTCCAGGAATACCTTGAAAGGGTTGGAGATTTCAAAGCTGCTTCTAAGGTGGCTTTGAGGAGGGTTGAACTTGTTTACTACAAACCACAGGAGGTTTATGATGCAATGAGAAAATTGGCCGAGTTGGATGAAGATGGTGATAATGAAGGGGCTGGTGAAGAGAAAGGGTTTGAGGATACAAGAATTCCGACTCCGTTTATTGCTACTCCGGAGCTTGTACCCCGCAAACCTACCTTCCCTGAGAACAGCAGGACTCTTATGGACATATTGGTATCCCTGATATACAAGTATGGCGATGAGCGTACTAAAGCGCGGGCAATGCTTTGTGACATATACCACCATGCTCTTCTTGATGAGTTCTCAATATCCCGTGATCTGCTGCTCATGAGCCACTTGCAAGACAGTGTTCAGCATATGGACATATCAACGCAGATACTGTTTAACAGGGCTATGGCACAGTTGGGCCTATGTGCTTTTCGGGTTGGGTTGATTTCTGAAGCACATGGCTGTTTATCCGAACTTTATTCTGGTGGAAGAGTGAAGGAGTTGCTTGCACAAGGTGTGTCACAGAGTCGTTATCATGAAAAGACACCAGAACAGGAAAGGTTGGAAAGGAGGCGTCAGATGCCGTATCATATGCACATAAATCTTGAGCTCCTGGAGGCAGTGCATCTTACAACCGCAATGCTGCTTGAAGTTCCCAATATGGCAGCCAATGTTCATGATGCAAAGCGCAAAGTCATTAGTAAGAATTTCCGCCGCTTACTTGAGGTCAGCGACAAGCAAACATTTACTGGTCCACCTGAAAATGTGAGAGACCATGTTATGGCTGCCACAAGGGCTCTCACCAAAGGAGACTTCAACAAGGCTTATGACATTATTGCGTCTCTTGATGTTTGGAAATTTGTTAGAAACCGAGACACTGTACTGGCGATGCTGAAAGATAAGATCAAGGAGGAGGCATTGAGGACATATCTCTTTACCTTCTCCTCATCTTATGATTCTCTGAGTCTTGATCAACTCACTAAGATTTTTGATCTCTCTGTTCCTCATACTCACAGCATTGTTAGTAGGATGATGATCAATGAAGAGCTTCATGCAAGCTGGGATCAGCCAACTGGCTGCATTATTTTCCAGGATGTGGAGCACTCTAGGTTGCAGGCATTGGCATTCCAGTTAACAGAGAAGTTATCCATCCTCGCCGAGAGTAATGAAAGAGCAATGGAGGCAACGACAGGTGGTGGTGGATTGGACCTTCCTATGAGGCGTAGAGATGGCCAGGACTATGCTGCTGCTGCTGCTGGTGGAAACACCACTGGGGGTGGCAGGTGGCAGGAATTGNNNNNNNNNNCCAAGGCAAGGTGGAGGGCGATATGGTAG 2604 0.4585 MASRFWTQGASDSEDESSDYDEVDETTAAEVDTTTKQSRYLTTELSDSDDSDSQRRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELINKCRESPESEEEKEEEESEEEYESDGEIIEPDQLKGRDDLKSDSEVSHYDDEKGDAGEGPWDQKLSKKDRLMDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPINVWKKCVNNMLIILDILVQYPNIVVDDAVEPDENETQKGPDHNGPIRIWGNLVAFLERIDAEFFKSLQCIDPHTREYVERLRDEPMFLVLAQNVQEYLERVGDFKAASKVALRRVELVYYKPQEVYDAMRKLAELDEDGDNEGAGEEKGFEDTRIPTPFIATPELVPRKPTFPENSRTLMDILVSLIYKYGDERTKARAMLCDIYHHALLDEFSISRDLLLMSHLQDSVQHMDISTQILFNRAMAQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLTTAMLLEVPNMAANVHDAKRKVISKNFRRLLEVSDKQTFTGPPENVRDHVMAATRALTKGDFNKAYDIIASLDVWKFVRNRDTVLAMLKDKIKEEALRTYLFTFSSSYDSLSLDQLTKIFDLSVPHTHSIVSRMMINEELHASWDQPTGCIIFQDVEHSRLQALAFQLTEKLSILAESNERAMEATTGGGGLDLPMRRRDGQDYAAAAAGGNTTGGGRWQELXXXXKARWRAIW 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc5g00051 867 MobiDBLite consensus disorder prediction 175 192 - -
Stsc5g00051 867 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 720 808 IPR000717 -
Stsc5g00051 867 Coils Coil 144 171 - -
Stsc5g00051 867 MobiDBLite consensus disorder prediction 43 63 - -
Stsc5g00051 867 MobiDBLite consensus disorder prediction 14 28 - -
Stsc5g00051 867 Pfam PCI domain 659 787 IPR000717 -
Stsc5g00051 867 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 853 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Stsc5g00051 867 MobiDBLite consensus disorder prediction 141 232 - -
Stsc5g00051 867 SUPERFAMILY "Winged helix" DNA-binding domain 715 790 IPR036390 -
Stsc5g00051 867 ProSiteProfiles PCI domain profile. 619 791 IPR000717 -
Stsc5g00051 867 MobiDBLite consensus disorder prediction 1 63 - -
Stsc5g00051 867 MobiDBLite consensus disorder prediction 193 232 - -
Stsc5g00051 867 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 46 651 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Stsc5g00051 867 Gene3D - 727 795 IPR036388 -
Stsc5g00051 867 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 839 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Stsc5g00051 867 MobiDBLite consensus disorder prediction 155 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc5g00051 Stsc-Chr5 298924 302684 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc5g00051 1 837 Eukaryotic Initiation Factors Gene Family AT3G56150 72.385 0.0 1183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc5g00051 K03252 - gmx:100781967 1398.65