Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc5g00048 ATGGCTGCTCCTGCTACCGCTCCCGCTGCAGATGTTGATCCCGCACAGATCGAGGTCAAGCTCTTCAACAGGTGGAGCTTCGACGACGTCCAGGTTACTGACATCTCCCTGAACGATTATATTGGAGTGGCTCCGTCGAAGCATGCGACATACGTTCCCCACACCGCCGGTAGGTACTCCGTGAAGCGTTTCAGGAAGGCACAGTGTCCAATCGTTGAGAGGCTCACTAACTCCCTCATGATGCACGGAAGAAACAATGGCAAGAAGCTTATGGCTGTTAGGATCATCAAACACGCCATGGAAATCATTCACTTGCTCACAGATCAGAACCCAATCCAAGTCATCGTCGACGCCGTCATCAACAGTGGTCCGCGTGAAGATGCAACTCGTATTGGATCTGCTGGAGTTGTTAGGAGGCAGGCTGTTGATATCTCACCCCTTCGCCGTGTCAATCAGGCTATCTATCTTCTAACAACAGGTGCACGAGAAGCTGCTTTCAGGAACATTAAGACAATTGCCGAATGCTTGGCCGATGAACTTATTAACGCAGCAAAAGGTTCATCCAACAGCTATGCTATCAAGAAAAAGGATGAGATAGAGAGAGTCGCCAAGGCCAATCGTTAA 624 0.4984 MAAPATAPAADVDPAQIEVKLFNRWSFDDVQVTDISLNDYIGVAPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc5g00048 207 CDD uS7_Eukaryote 20 207 IPR005716 GO:0003735|GO:0006412|GO:0015935
Stsc5g00048 207 NCBIfam 30S ribosomal protein S7 18 207 IPR005716 GO:0003735|GO:0006412|GO:0015935
Stsc5g00048 207 PANTHER RIBOSOMAL PROTEIN S7 5 207 IPR000235 GO:0006412
Stsc5g00048 207 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 1 207 IPR000235 GO:0006412
Stsc5g00048 207 Gene3D Ribosomal protein S7 domain 3 207 IPR036823 -
Stsc5g00048 207 SUPERFAMILY Ribosomal protein S7 20 207 IPR036823 -
Stsc5g00048 207 ProSitePatterns Ribosomal protein S7 signature. 73 99 IPR020606 GO:0003723|GO:0003735|GO:0006412
Stsc5g00048 207 FunFam 40S ribosomal protein S5 3 207 - -
Stsc5g00048 207 Pfam Ribosomal protein S7p/S5e 61 207 IPR023798 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc5g00048 Stsc-Chr5 284631 286890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc5g00048 1 207 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 88.889 6.20e-136 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc5g00048 K02989 - gmx:100815850 372.089