Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc5g00037 ATGAAAGGGAGCTTGAAGATGACGAGCTTGTTGAGCCATCTCAGAAATTCCTCTAAGAAAACCAAAATTAACACTAACAGAAAGAGACGCAAGCTTAGAAACCATAACTCCATTTCCATTCCCAAAGACTTGCCTTATCCTCAACAAGAAGAAGATGATGATGAAGAAGAGAATGCTGAGGAAGGTTTCAAGCTCAAAAGCTCTGCCCCATCACACACACATGGTGTTCAGCCCTTGGGGAACCTCTACCTCAACCCAGGTTCCATCAACTTCAGAGATACAGGCTTAGGTACCCTTCATACCCTATCCGACGAGCTTGTTCTTGAGATTCTAGGGTTCTTGGATAGTTCTGATTTGGGGGTTTTGTCCACTGTGAGCAAGTCCTTTTATGTTTTCACAAACCACGAACCTCTTTGGAGGAACCTTGTGTTGGAGAATCTCAATGGTGGGTTTCAGTTCAATGGGTCTTGGAAATCAACTTATGTTGCTGCTTCCTACCCTTCATTTGATATATCAAGTAATGCACTTCAAAGCTTTAAAGTTAGAGACTTTTATTCTGATTATCTCTTTCAGAGTTGGCTCTGTGCTAATCTTGAAATGAAACCTGAGTGGTTGGAGAGGGATAATATTGTTAGGAAGAGGGGCATTTCCGTTGAAGAGTTTGTGTTCAACTTCGAGGAGCCTAATAAGCCGGTGTTGTTGGAAGGGTCTATTGATAATTGGGATGCACTCAGGAATTGGGATAGAGATTATTTGATGCACTTGTCTGGTGATGTTAAGTTTGCAGTTGGGCCAGTTGAAATGAAGCTTGGAGACTATCTTCGCTACTCGGATCAAGTTAGAGAAGAAAGGCCATTGTATTTGTTTGATCCCAAATTTACTGAAAAGGTTCCAAAATTAGGTTCTGAATATGAAGTCCCGGTGTATTTTCGAGAGGATTTGTTTGGTGTTTTAGGCAGTGAGAGACCTGACTACAGGTGGATCATTATTGGTCCTGCCGGATCCGGATCATCTTTTCATGTTGATCCGAATTCAACTTCAGCTTGGAATGCAGTGATCAAGGGATCAAAGAAATGGATACTATTTCCTCCAGATGTGATCCCGCCAGGAGTTCATCCTAGTCCTGATGGTTCAGAGGTTGCATCTCCCGTTTCGATAATGGAGTGGTTCATGAACTTCTATGGTGCAACAAAGAACTGGAAAAAGAAACCTGTTGAGTGTGTATGCAAAGCTGGGGAGGTTATCTTTGTACCTAATGGATGGTGGCATTTGGTGATCAACCTGGAGGAGTCCATAGCCATAACCCAAAATTATGTTAGTAGGAGAAATTTGTTAAATGTGCTAGATTTTCTAAATAGGCCAAATGCTAGCACACTGGTGTCTGGAACAAGGGATCGTGTGAATTTGTATGATAAGTTTAAGAATGCTATTGAGGCTTCTTTCCCTGGAGAAATTGATGAACTGACCAGAAAAGAAGCAGAGAAGAAGGTCCAGCAGAAGAAACTCTCATTCTGGGATTCTGTCTCAGATTCCAATGCTGGAGCTTTCAAGTTCTCTTTCTAG 1563 0.4197 MKGSLKMTSLLSHLRNSSKKTKINTNRKRRKLRNHNSISIPKDLPYPQQEEDDDEEENAEEGFKLKSSAPSHTHGVQPLGNLYLNPGSINFRDTGLGTLHTLSDELVLEILGFLDSSDLGVLSTVSKSFYVFTNHEPLWRNLVLENLNGGFQFNGSWKSTYVAASYPSFDISSNALQSFKVRDFYSDYLFQSWLCANLEMKPEWLERDNIVRKRGISVEEFVFNFEEPNKPVLLEGSIDNWDALRNWDRDYLMHLSGDVKFAVGPVEMKLGDYLRYSDQVREERPLYLFDPKFTEKVPKLGSEYEVPVYFREDLFGVLGSERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGSEVASPVSIMEWFMNFYGATKNWKKKPVECVCKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLNRPNASTLVSGTRDRVNLYDKFKNAIEASFPGEIDELTRKEAEKKVQQKKLSFWDSVSDSNAGAFKFSF 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc5g00037 520 Pfam F-box-like 104 144 IPR001810 GO:0005515
Stsc5g00037 520 Gene3D Cupin 180 440 - -
Stsc5g00037 520 MobiDBLite consensus disorder prediction 1 74 - -
Stsc5g00037 520 SMART fbox_2 102 142 IPR001810 GO:0005515
Stsc5g00037 520 Pfam Cupin-like domain 220 438 IPR041667 -
Stsc5g00037 520 Gene3D - 94 168 - -
Stsc5g00037 520 SMART cupin_9 286 455 IPR003347 -
Stsc5g00037 520 ProSiteProfiles JmjC domain profile. 295 455 IPR003347 -
Stsc5g00037 520 MobiDBLite consensus disorder prediction 20 35 - -
Stsc5g00037 520 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 96 518 - -
Stsc5g00037 520 FunFam F-box protein At1g78280 190 440 - -
Stsc5g00037 520 ProSiteProfiles F-box domain profile. 96 142 IPR001810 GO:0005515
Stsc5g00037 520 SUPERFAMILY F-box domain 97 162 IPR036047 GO:0005515
Stsc5g00037 520 SUPERFAMILY Clavaminate synthase-like 212 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc5g00037 Stsc-Chr5 229268 231368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc5g00037 87 444 Glycosyltransferase AT1G78280 37.875 5.24e-77 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc5g00037 Cupin_8 2.6e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc5g00037 - - gmx:100782241 867.455