Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc5g00033 ATGGGGATAAATGTGCAGTTCAGTGATGTGACATATAAGGTAGTGATGAAAGGATTGACCACAAGTGAAGAGAAGGAAATACTCAAGGGTATAACTGGTTGTGTGAGTCCAGGGGAAGTTTTAGCATTGATGGGGCCCTCAGGAAGTGGAAAGACATCACTGCTGAATCTTCTTGGAGGAAGGATAAGTCATCACCCCACTGTTGGTGGATCTATCACTTACAATGATCAGCCTTATTCTAAGTTCCTCAAGAGTAGGATTGGATTTGTGACACAAGATGATGTTCTGTTCCCTCACCTAACTGTAAAAGAAACATTGACATATGCAGCTCGACTAAGATTGCCAAATACATTAACTCAGGAGCAAAAGGAACAGCGTGCTTTAGATGTCATCTATGAGCTTGGCTTGGAAAGGTGCCAAGACACTATGATAGGAGGATCCTTTGTTAGAGGAGTATCTGGGGGAGAGAGGAAGAGAGTCTGTATTGGCAATGAGATCCTAATCAACCCTTCTCTTCTTCTTCTTGATGAACCAACTTCTGGCCTTGATTCTACAACAGCCTTGAGGATTGTTCAGATGCTGCAACACATAGCAGAGGCAGGTAAAACGGTAGTGACAACAATCCATCAACCATCAAGCAGGCTCTTCCATAAATTTGATAAGTTGATCCTTTTAGGAAAAGGGAGCTTGATTTACTTTGGAAAAGCTTCTGAAGCTATGTCTTACTTCCAGTTCATAGGGTGTTCACCTCTCATTACCATGAACCCAGCAGAGTTTCTACTTGACCTTGCAAATGGTAACTTAAATGATGTTTCTGTTCCATCAGAGTTAGGGGATAAAGTTCAAATGGAGAATATGTCAGAAGCTGAAACGCGCAATGGGAAACCATCTCCTGCACTTGTGCAAGAGTATCTAGTGGAGGCATATGAGACTAAAGTTGCTGGAACAGAAAAGAAAAAGCTAATGGTTCCTATTCCCCTTGATGAAGAAGTCAAGTCTAAGGTTCTCTGTCATAAAAGACAATGGGGAGCAAGTTGGTTTGAGCAATTTTCCATATTGTTTTCAAGAGGGTTCAAAGAAAGGAGGCATGACTATTTCAGCTGGCTGAGAATCACACAAGTTCTATCCACAGCAGTCATCTTAGGATTGCTATGGTGGCAATCAGATGCTAAAAACCCAAAAGGCATGCAAGACCAGGCAGGACTACTTTTCTTTATTGCTGTATTTTGGGGATTCTTTCCTGTCTTCACTGCAATATTCACATTTCCTCAAGAGAGGGCAATGTTAAATAAGGAGAGATCAACAGATATGTATAGGCTAAGTGCATACTTTGTGGCAAGAACTACAAGTGACCTTCCACTAGACCTTATCTTACCAGTGCTTTTCCTCTTAGTTGTTTACTTCATGGCCGGATTGAGACTCAGTGCAGGACCATTCTTCCTTAGCATCCTTACAGTTTTCCTCTGCATAGTTGCAGCTCAGGGACTTGGACTTGCTATTGGGGCAACACTAATGGACTTGAAAAGAGCAACAACATTGGCTTCAGTTACTGTGATGACTTTCATGCTTGCAGGAGGATTTTTTGTGAAGAGGGTGCCTATATTTATATCATGGATCCGGTACATATCTTTCAACTACCACACTTACAAGCTTCTGCTGAAGGTGCAATATGATGAAGACGTGACACCAATCATAAATGGAATCAAAATTGATAGTGGTTCAACAGAGGTGGCTGCTCTGATAGCCATGGTTTTTGGTTACCGTCTATTGGCATATATTTCCTTGCGTTGGATGAGTGTTTCATAA 1806 0.4169 MGINVQFSDVTYKVVMKGLTTSEEKEILKGITGCVSPGEVLALMGPSGSGKTSLLNLLGGRISHHPTVGGSITYNDQPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPNTLTQEQKEQRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEILINPSLLLLDEPTSGLDSTTALRIVQMLQHIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLIYFGKASEAMSYFQFIGCSPLITMNPAEFLLDLANGNLNDVSVPSELGDKVQMENMSEAETRNGKPSPALVQEYLVEAYETKVAGTEKKKLMVPIPLDEEVKSKVLCHKRQWGASWFEQFSILFSRGFKERRHDYFSWLRITQVLSTAVILGLLWWQSDAKNPKGMQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERSTDMYRLSAYFVARTTSDLPLDLILPVLFLLVVYFMAGLRLSAGPFFLSILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVKRVPIFISWIRYISFNYHTYKLLLKVQYDEDVTPIINGIKIDSGSTEVAALIAMVFGYRLLAYISLRWMSVS 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc5g00033 601 Gene3D - 4 246 IPR027417 -
Stsc5g00033 601 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 5 591 - -
Stsc5g00033 601 Pfam ABC-2 type transporter 348 557 IPR013525 GO:0016020|GO:0140359
Stsc5g00033 601 ProSitePatterns ABC transporters family signature. 152 166 IPR017871 GO:0005524|GO:0016887
Stsc5g00033 601 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 5 252 IPR003439 GO:0005524
Stsc5g00033 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 245 IPR027417 -
Stsc5g00033 601 FunFam ABC transporter G family member 22 15 246 - -
Stsc5g00033 601 SMART AAA_5 37 229 IPR003593 GO:0016887
Stsc5g00033 601 Pfam ABC transporter 28 180 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc5g00033 Stsc-Chr5 208175 211118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc5g00033 5 296 Calmodulin-binding Proteins AT2G36910 26.490 3.49e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc5g00033 K05681 - gmx:100800934 1016.14