Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc5g00030 ATGGTCCCTGTTTCCTCTCCTCCCTCCTCTCTTACTGCAGGTGGGACCGGCGTTCCAGCCTCGATCTCCTCTTCATGGCCCTGCCCTCTATTTCGTGACGCCTTTATTTTCCTCTTCATGGAGAAGGTAACGGGGATGGAAGGCAAGGCTGAGGGTCAAATGACGTCGGCTGCGGCCTTCGTTGAAGGAGGGATTCAAGAATCATGTGATGATGCTTGCAGCATTTGCCTTGAGGATTTCTCTGAAAGTGATCCTTCAACAACCACTGCATGCAAGCATGAGTTTCACCTTCAGTGTGTTCTTGAATGGTGCCAGCGAAGTTCCCAGTGTCCTATGTGTTGGCAACCTATTAGCTTGAAGGATCCAACCAGGAAGTTGAGGGCTATCGCACCAAGAACTGCTGCTATCTTTCACCACCCTGCCTTTGGTGATTTTGGATTGCAGCATTTAGGCATAACTGATGCTGATCTTGAACAACGAATAATTCAACATTTAGCTGCTGCAGCAGCAGTTGGGAGATCACAACACCATGGTCGGAGAGAGGGGCATCAAACTAGGGCACCTGCTCATGGTCATCCACCTGTCTTTGTTTTGTCATCTCAGCCAAGTGCACCTCAAGTCCCTGAATTAGCTGCTAGAGGCGGAGATGAACCAGCTACAAATCCTTTAAGATCTCCATCTAGTCCTATGGCATCTGGTGGAGGTGTAGTATCACGGCAGATCCCACATCTTCAGATTCAAAGCTCTTCTTCAGCTTCTCGGGATAGAGACTCTATTGCTCAATCTTCTCCAGCTAACCAAGATAGAGCAGGTCCATCAGAATCCCTGTCAGTTTCTGATTCTCTGCGGGCCCGATTTAATGCGTTGTCCATGAGGTACAAAGATTCAATTTCAAAAGGCGCAAGGGGATGGAAGGAGAGGTTGTTCTGTCATACTTCTTCCATGCCAAAGGTTGGTTCAGAAGCTAGGAGAGAGGCTGGAATTGCTGGCGTCACTCAATTGATGGAATCCCAATCTCTTCAAAGTAGAGCAACGTATAGAACTGCATCTACCTCTTTGTCAAATCATTTGGAGGGTCATCCCACTGGAGAGGCGACCAACCAGAACAGGGGAGCTAGAACAGAGAATGCGTCACATGATAACAACACTCCAGCTGCTTTTTCTGCTGGCTCACGTTCGGATTGA 1185 0.4844 MVPVSSPPSSLTAGGTGVPASISSSWPCPLFRDAFIFLFMEKVTGMEGKAEGQMTSAAAFVEGGIQESCDDACSICLEDFSESDPSTTTACKHEFHLQCVLEWCQRSSQCPMCWQPISLKDPTRKLRAIAPRTAAIFHHPAFGDFGLQHLGITDADLEQRIIQHLAAAAAVGRSQHHGRREGHQTRAPAHGHPPVFVLSSQPSAPQVPELAARGGDEPATNPLRSPSSPMASGGGVVSRQIPHLQIQSSSSASRDRDSIAQSSPANQDRAGPSESLSVSDSLRARFNALSMRYKDSISKGARGWKERLFCHTSSMPKVGSEARREAGIAGVTQLMESQSLQSRATYRTASTSLSNHLEGHPTGEATNQNRGARTENASHDNNTPAAFSAGSRSD 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc5g00030 394 MobiDBLite consensus disorder prediction 1 21 - -
Stsc5g00030 394 MobiDBLite consensus disorder prediction 172 277 - -
Stsc5g00030 394 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 56 122 - -
Stsc5g00030 394 FunFam E3 ubiquitin-protein ligase RHF2A 48 122 - -
Stsc5g00030 394 Pfam Ring finger domain 72 113 IPR001841 -
Stsc5g00030 394 SMART ring_2 73 113 IPR001841 -
Stsc5g00030 394 SUPERFAMILY RING/U-box 65 125 - -
Stsc5g00030 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 122 IPR013083 -
Stsc5g00030 394 MobiDBLite consensus disorder prediction 346 394 - -
Stsc5g00030 394 ProSiteProfiles Zinc finger RING-type profile. 73 113 IPR001841 -
Stsc5g00030 394 MobiDBLite consensus disorder prediction 241 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc5g00030 Stsc-Chr5 194011 197981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc5g00030 70 121 C3H Transcription Factor Family AT4G00335 48.077 1.25e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc5g00030 K19043 - gmx:100800419 416.001