Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc5g00026 ATGGGAAACAATTGTGTTGGAGCTAGAGACTCCAAAGAAGGACTATTTTCCTTGTCATATGCTGTGTCCACTCCTTTCTGGTGGTCTAACCCAACAACCGCAATCCAAGAACCTCCTTCACGCCCACCACCTGTTCAACAAAATGCTCCACAGCCAATCAAGATTGATTCCCGTCATCAATTACAGTACTACCACAAACAGGAGGAGGATAACGATAATGATAACCAACAATCTATACAGGTAGTAGTTAGACCAGAAGAGAGGACACTGCAAAGTACTAAGAGACCTGCAAGTGCAGGGCTTCGAGCCGACTCGGTTCTGCCCAGACAAACAGGACACATTAAAGAGTACTTTCATTTGGGAGCTGAGCTTGGGCATGGACAATATGGAACAACTTTCCTTTGTGTAGAGAAGGCTACTGGAATCAAGTATGCGTGCAAGTCCATTGCTAAAGTCAAGTTGCTCACGGATGATGATGTGGATGATGTCAGGAGGGAGATTCAGATAATGCATCACTTGGCGGGAAGCCCCAATGTGGTCTCCATCAAAGGGGCTTATGAGGATGCTGTTGCAGTTCATCTTGTCATGGAGTTGTGTGCAGGGGGTGAGCTCTTTGATAGGATCATCGAAAGGGGCCATTACACCGAAAAGAAGGCGGCTAAGCTCGCCAGGACTATTGTTAGTGTTCTGGAGGCTTGCCACTCCCTTGGAGTTATGCATCGTGACCTTAAGCCCGAGAATTTCCTTTTTGTTGATGTCCATGAAGATTCCAACCTCAAGGCAATAGATTTTGGAATGTCTGCTTTTTTCAAACCAGGAGACAAATTCACCGACATGGTAGGAAGTCCTTACTACATTGCACCTGAAGTTTTGTGCAAGCATTATGGCCCAGAAGCAGATGTTTGGAGTGCTGGTGTTATGATATACATTCTCTTATGTGGATTCCCTCCATTTTGGGGTGAATCGGAGCAAGAGATTTTCCGGGAGGTTTTGAATGGTGATCTTGATTTCTCTTCTGATCCTTGGCCAAGTATCTCTGAAAGCGCGAAAGACTTGGTGAGGAACATGCTTGTTAGAGATCCAAGAAAACGGATTACAGCTCATGAAGTTCTTTGTCACCCTTGGATTCAGGAAAATGGAGTTGCTCCAGACAAACCTTTAGATTCTGCAGTTCTGAATCGCCTGAAGCAGTTTTCTGCAATGAACAAACTCAAGAAAATGGCTCTCAGAGTTATTGCAGAGAATCTCTCTGAAGAAGAAATTTCGGGATTGAAAGAAATATTCAAGATGATAGACACGGACAACAGTGGTCAAATTACTTTTGAAGAACTCAAGGTTGGACTCCGAACATTTGGTGCTAATCTCAGTGAATCAGAAATGTATGATCTAATGCAAGCTGCAGATGTTGATAAGAGTGGCACAATTGAGTATGGAGAATTCATAGCTGCAACATTGCATTTAAACAAAGTTAAAAGAGAAGATCATTTGGTCACAGCTTTCTCATTCTTTGATAAAGACGGAAGTGGCTACATCACTCAAGATGAGATTCAACAAGCTTGTGAAGAATTTGGCATGGAGGATGTCAGCTTGGATGAAATCATTCGAGAAGCTGATCAGAATAATGATGGCAGAATAGACTACAATGAATTCGTTGCAATGATGCAGAGAGGAGATGCAGATTTAGGAAAGACTGGTGTAAAAGGTAGCTCTAGTTTTAGAATTGGATTTAGGGAGGCACTTTCAGTATGCTGA 1752 0.4304 MGNNCVGARDSKEGLFSLSYAVSTPFWWSNPTTAIQEPPSRPPPVQQNAPQPIKIDSRHQLQYYHKQEEDNDNDNQQSIQVVVRPEERTLQSTKRPASAGLRADSVLPRQTGHIKEYFHLGAELGHGQYGTTFLCVEKATGIKYACKSIAKVKLLTDDDVDDVRREIQIMHHLAGSPNVVSIKGAYEDAVAVHLVMELCAGGELFDRIIERGHYTEKKAAKLARTIVSVLEACHSLGVMHRDLKPENFLFVDVHEDSNLKAIDFGMSAFFKPGDKFTDMVGSPYYIAPEVLCKHYGPEADVWSAGVMIYILLCGFPPFWGESEQEIFREVLNGDLDFSSDPWPSISESAKDLVRNMLVRDPRKRITAHEVLCHPWIQENGVAPDKPLDSAVLNRLKQFSAMNKLKKMALRVIAENLSEEEISGLKEIFKMIDTDNSGQITFEELKVGLRTFGANLSESEMYDLMQAADVDKSGTIEYGEFIAATLHLNKVKREDHLVTAFSFFDKDGSGYITQDEIQQACEEFGMEDVSLDEIIREADQNNDGRIDYNEFVAMMQRGDADLGKTGVKGSSSFRIGFREALSVC 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc5g00026 583 FunFam Calcium-dependent protein kinase 1 384 558 - -
Stsc5g00026 583 ProSiteProfiles EF-hand calcium-binding domain profile. 455 490 IPR002048 GO:0005509
Stsc5g00026 583 Pfam Protein kinase domain 119 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc5g00026 583 SMART efh_1 459 487 IPR002048 GO:0005509
Stsc5g00026 583 SMART efh_1 495 523 IPR002048 GO:0005509
Stsc5g00026 583 SMART efh_1 423 451 IPR002048 GO:0005509
Stsc5g00026 583 SMART efh_1 529 557 IPR002048 GO:0005509
Stsc5g00026 583 SUPERFAMILY EF-hand 405 556 IPR011992 -
Stsc5g00026 583 ProSitePatterns EF-hand calcium-binding domain. 504 516 IPR018247 -
Stsc5g00026 583 CDD STKc_CAMK 118 375 - -
Stsc5g00026 583 SUPERFAMILY Protein kinase-like (PK-like) 116 383 IPR011009 -
Stsc5g00026 583 Gene3D - 387 558 - -
Stsc5g00026 583 ProSiteProfiles EF-hand calcium-binding domain profile. 530 560 IPR002048 GO:0005509
Stsc5g00026 583 ProSitePatterns EF-hand calcium-binding domain. 538 550 IPR018247 -
Stsc5g00026 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Stsc5g00026 583 ProSitePatterns EF-hand calcium-binding domain. 468 480 IPR018247 -
Stsc5g00026 583 ProSiteProfiles EF-hand calcium-binding domain profile. 491 526 IPR002048 GO:0005509
Stsc5g00026 583 ProSitePatterns EF-hand calcium-binding domain. 432 444 IPR018247 -
Stsc5g00026 583 ProSiteProfiles EF-hand calcium-binding domain profile. 419 454 IPR002048 GO:0005509
Stsc5g00026 583 FunFam Calcium-dependent protein kinase 1 120 203 - -
Stsc5g00026 583 SMART serkin_6 118 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc5g00026 583 CDD EFh 499 555 IPR002048 GO:0005509
Stsc5g00026 583 ProSiteProfiles Protein kinase domain profile. 118 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc5g00026 583 PANTHER SERINE/THREONINE-PROTEIN KINASE 111 550 - -
Stsc5g00026 583 Gene3D Transferase(Phosphotransferase) domain 1 204 386 - -
Stsc5g00026 583 FunFam Calcium-dependent protein kinase SK5 204 388 - -
Stsc5g00026 583 MobiDBLite consensus disorder prediction 31 51 - -
Stsc5g00026 583 Gene3D Phosphorylase Kinase; domain 1 120 203 - -
Stsc5g00026 583 CDD EFh 424 483 IPR002048 GO:0005509
Stsc5g00026 583 Pfam EF-hand domain pair 424 484 IPR002048 GO:0005509
Stsc5g00026 583 Pfam EF-hand domain pair 494 555 IPR002048 GO:0005509
Stsc5g00026 583 ProSitePatterns Protein kinases ATP-binding region signature. 124 151 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc5g00026 Stsc-Chr5 176798 180212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc5g00026 1 577 EF-hand Containing Proteins AT5G04870 63.844 0.0 788
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc5g00026 Pkinase 5.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc5g00026 K13412 - cave:132191719 839.721