Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc5g00019 ATGAGCAACGCTACTAGTGGGGGGTACCTTGGGTCCAGCAACATCACTGGCTATGGCTATGGCATAGGAATCTCCATTGGGATCCTCCTTCTGATCACCGCCATAACCCTAACCTCCTACTTCTGCACCAGACAGAATAATCAGCAACTCCCTCCTGCGGCTCCTAACAGGAGACAGAGACCGCAGGAGGGGCACAGAGTTATTGATGTTGGGATAGATGAAGAAACACTTGTGAGTTATCCAAAGTTGTTGTACTCAGAAGCGAAACTAATGAAGAAGAATGATTCAACAGGTATTGGTGGAGCATGTTGTTCTATATGCCTTGCAGATTACAAAGGCAGTGATATGCTTAGGGTGTTACCAGATTGTGGCCACCAATTCCATGTGAAGTGCATAGATCCATGGCTGAGACTGCACCCAACTTGTCCACTCTGTAGAACCTCTCCCATCCCAACGCCTCTCTCAACTCCCTTGGCTGAAGTCGTTCCATTGTCTTCTACCACACACCATTCTCATAATATATAA 525 0.4705 MSNATSGGYLGSSNITGYGYGIGISIGILLLITAITLTSYFCTRQNNQQLPPAAPNRRQRPQEGHRVIDVGIDEETLVSYPKLLYSEAKLMKKNDSTGIGGACCSICLADYKGSDMLRVLPDCGHQFHVKCIDPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLSSTTHHSHNI 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc5g00019 174 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 160 IPR045899 -
Stsc5g00019 174 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Stsc5g00019 174 SMART ring_2 104 145 IPR001841 -
Stsc5g00019 174 Pfam Ring finger domain 104 146 IPR001841 -
Stsc5g00019 174 SUPERFAMILY RING/U-box 103 151 - -
Stsc5g00019 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 150 IPR013083 -
Stsc5g00019 174 CDD RING-H2_PA-TM-RING 103 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc5g00019 Stsc-Chr5 137126 137777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc5g00019 6 165 C3H Transcription Factor Family AT5G06490 48.066 2.89e-54 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc5g00019 - - gmx:100811799 197.593