Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc5g00018 ATGTGTTTTAGTCACCCAGTTATAGCAGGATTACAACAAGCAGGTGACTTTGATGAGATGGCACAAGAGTGGTTTAGCAACAATGAAGGAGTACGAGCATCTAGTCTCAACTCATCAACAACAATAATAATGAAGAAGGAGGAAGTGATAGTGAAAATCATAAATAAGAAGAGGGTGAAAATCATAATAGATCTTAGTTCAAGGAAAGCCATCTATAAAAAGAGACGTGTTGGGTTGTTGAAGAAGACCAATTGCATGATGAGTGATTATCCTATTCCTACCATGTGTTTTAGTCACCCAGTTATAGCAGGATTACAACAAGCAGGTGAATTTGAGATGGCACAAGAGTCGTTTAGCAACAATGAAGGAGTACGAGGAATCCAGTCTCAACTCATCAACAATGAGGAAGTGATAGTGAAAACTATAAATAAGAGGAGGGTGAAACTACAGCTCATAATAGACCCTAGTTCAAGGAAAGCCACCTATAAGAAGAGACGTGCTGGGTTATTGAAGAAGATAGAGCAACTCCGCATCCTTTGCGGCATTAAGGCTTGCATTGTCATCTTTGGTCCAGGAGATACCAAGCCTACAGTGTGGCCATCTGTGGAAGAAGCTTCACAGATTGTGCAAAAATTTGAGGAGATTCCAGAGTTGGAACGGTACAACAGATCTATAAGCCATCAACAGTATAGGCAACAAAGGCTGGTTGGGATGGAAAAGCAACTTGAAAAGCTTAAAAAACTTAATGATCAAAAAGAGATGACCATCTTTGTACATCAAATCTGCAAGGAAGGTAAGCTTTTATCTGATTTTAATGAGGATGAGTTGAAGCGTTTGCTCACTTATGTTGATGACAAGTTGAAGGATGTTAGAAATAGCAAAATGTCCTCGTCCTCGGTGCCAGCAGGTGTATCAGTGCCTCAACTGATCATTTCCAGTGAAGATAACACCATCACACCAGATGAACTATTGTCAATTGCAGAGCAACAAACAAATAATTTTGAAGGTGTTGTTCCAAAATATAACGAGGAACTAGATGATGACTTTTTTTGTGGTTTATTCGATGAAAGTGGGTCACTTTTGTTTCCTCCAAACGAAAATGAGTCTGTGGTTCCACCACCAGAAGATGGCAAATTATCTTAG 1143 0.3946 MCFSHPVIAGLQQAGDFDEMAQEWFSNNEGVRASSLNSSTTIIMKKEEVIVKIINKKRVKIIIDLSSRKAIYKKRRVGLLKKTNCMMSDYPIPTMCFSHPVIAGLQQAGEFEMAQESFSNNEGVRGIQSQLINNEEVIVKTINKRRVKLQLIIDPSSRKATYKKRRAGLLKKIEQLRILCGIKACIVIFGPGDTKPTVWPSVEEASQIVQKFEEIPELERYNRSISHQQYRQQRLVGMEKQLEKLKKLNDQKEMTIFVHQICKEGKLLSDFNEDELKRLLTYVDDKLKDVRNSKMSSSSVPAGVSVPQLIISSEDNTITPDELLSIAEQQTNNFEGVVPKYNEELDDDFFCGLFDESGSLLFPPNENESVVPPPEDGKLS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc5g00018 380 Gene3D - 154 237 IPR036879 GO:0003677|GO:0046983
Stsc5g00018 380 SUPERFAMILY SRF-like 144 234 IPR036879 GO:0003677|GO:0046983
Stsc5g00018 380 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 152 197 IPR002100 GO:0003677|GO:0046983
Stsc5g00018 380 CDD MADS_SRF_like 144 220 IPR033897 GO:0000981|GO:0000987|GO:0045944
Stsc5g00018 380 PRINTS MADS domain signature 144 164 IPR002100 GO:0003677|GO:0046983
Stsc5g00018 380 PRINTS MADS domain signature 164 179 IPR002100 GO:0003677|GO:0046983
Stsc5g00018 380 PANTHER MADS BOX PROTEIN 146 292 - -
Stsc5g00018 380 SMART madsneu2 142 201 IPR002100 GO:0003677|GO:0046983
Stsc5g00018 380 ProSiteProfiles MADS-box domain profile. 142 190 IPR002100 GO:0003677|GO:0046983
Stsc5g00018 380 Coils Coil 235 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc5g00018 Stsc-Chr5 133745 135406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc5g00018 144 301 Type I MADS-box Gene Family AT1G31630 34.337 5.11e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc5g00018 SRF-TF 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc5g00018 - - adu:107487931 271.552