Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc5g00017 ATGGCGAAGCAAAGTGTTTATCCTAATAAGGAACATGAAGGGATTGCCCACAATTCTTCAGGGCCCTGGTGGAGTCTCTTTGGATCTCAATCCGGGGAATCTTGTGGCCAAATGAAACCCTTTTCACTGGAGATTCCTAATTATGTTGACCAAATTGCCGGCGCCAAGCAATCGGCAAGAGCAGCTGAAAACCTGTCTGGGAAAGGGCATACAACTCAGTTTACCATCTTTCCAGAGGATTGTAAAATGTCAGGTGGTACACAAAAGCCTCAAGCAACCTTATCTCTGCAGTCACCACTTGCCGATACCCACACTGGATTGGAGCTTGGATTCAACCAGCCAATGATCTGTGCAAAATATCCATATGTGGATCAAATTTATGGGCTCTTCTCCCCTTATGGACCTCAAATTTCGGGGCGCATAATGCTACCGCTTAGCATGACATCTGATGATGGACCAATTTATGTGAATGCTAAGCAGTACCATGGAATCATCAGACGTCGGCAGTCCCGTGCAAAAGCTGTACTTGATAACAAATTGACAAAACGTCGCAAGCCCTATATGCATGAATCTCGTCATCTCCATGCAATGCGGCGACCAAGAGGATGTGGCGGTCGCTTCTTGAACACAAAGATTTCTGATGATGGAAATGATAAAACCAAAAGTGGAAGCAAGGTGAACAAAACTCATGGAGAACAGTTGCAATCTTGTGGCTCTCAGAGTTCTGAAGTGCTGCAATCTGAGGTTGGAACTCTGAATTCTTCCAAAGAGACTAATGGAAGCAGTCCAAATATTTCTGGATCAGAGGTGACTAGCATGTATTCGCGCGGAGGTCTCGATAATTTTGCTATCAGTGTCCACTCTCTAGCGGACATGATAGATGGTGGGCGGGGCATGGACATGATCATGCCCCCCAAATGGGTTGCAGCAGTTGGTGGCAACTGCTGCAACCTTAATGCTTGA 963 0.4611 MAKQSVYPNKEHEGIAHNSSGPWWSLFGSQSGESCGQMKPFSLEIPNYVDQIAGAKQSARAAENLSGKGHTTQFTIFPEDCKMSGGTQKPQATLSLQSPLADTHTGLELGFNQPMICAKYPYVDQIYGLFSPYGPQISGRIMLPLSMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLDNKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTKISDDGNDKTKSGSKVNKTHGEQLQSCGSQSSEVLQSEVGTLNSSKETNGSSPNISGSEVTSMYSRGGLDNFAISVHSLADMIDGGRGMDMIMPPKWVAAVGGNCCNLNA 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc5g00017 320 SMART cbf3 149 210 IPR001289 GO:0003700|GO:0006355
Stsc5g00017 320 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 153 207 IPR001289 GO:0003700|GO:0006355
Stsc5g00017 320 MobiDBLite consensus disorder prediction 227 267 - -
Stsc5g00017 320 MobiDBLite consensus disorder prediction 212 226 - -
Stsc5g00017 320 ProSiteProfiles NF-YA/HAP2 family profile. 150 210 IPR001289 GO:0003700|GO:0006355
Stsc5g00017 320 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 55 275 IPR001289 GO:0003700|GO:0006355
Stsc5g00017 320 Gene3D - 150 211 - -
Stsc5g00017 320 PRINTS CCAAT-binding transcription factor subunit B signature 184 207 IPR001289 GO:0003700|GO:0006355
Stsc5g00017 320 PRINTS CCAAT-binding transcription factor subunit B signature 153 175 IPR001289 GO:0003700|GO:0006355
Stsc5g00017 320 MobiDBLite consensus disorder prediction 205 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc5g00017 Stsc-Chr5 114037 118098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc5g00017 1 318 CCAAT-HAP2 Transcription Factor Family AT3G05690 44.510 1.57e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Stsc5g00017 CBFB_NFYA 7.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc5g00017 K08064 - gmx:100815382 457.603