Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc5g00016 | ATGGCTGCTGCTACAGCTTCTGTTTCCTATTCTTCTTCTTCTATCTGCAACAGAATCTACAACCCCACCTTCACCCACACTTCAATTTCACTCACAACTAACTTCCCTCACAGACCCATCTCTTACAAACCCCTCACCTTCAACCCCAAGCCCCAAAGTTTCAATCTTTTCCCTCTCCCTCTTCACCCTTCCTCCGCTGCATTCGATGGATTCGAAGCCTCTCAAGAACAAGAACAAGAACCAGAAGAGACCTCTGAAGCACCGCAACAACAACAAGAAGAGCAAAGGGTTTCAGATTCCAGTGACTCTGGGAGGCTCTATGTTGGAAACTTGCCTTATTCAATCACCTCCACCGAATTGTCCGAGCTCTTTGGAGAAGCTGGCACTGTTGTGTCTGTTGAGATTGTGTACGATCGTGTCACGGATAGAAGCAGAGGATTTGCATTTGTTACAATGGGGAGTGTTGGTGATGCTCAAGAAGCAATTCGAATGTTTGATGGCTCCCAAGTTGGCGGTAGGACTGTCAAGGTAAACTTCCCGGAAGTGCCCAAGGGAGGTGAAAGGTTGGTAATGGGGCCGAAAATTAGGAACAACTCCAGAGGCTTTGTAGACAGCCCTCACAAGCTTTATGCTGGAAACCTTGGTTGGAGACTGACTTCGGAGGGTCTTCGAGATGCCTTCGCTGACCAGCCAGGCTTATTGAGTGCCAAGGTCATCTATGAGAGGGACTCTGGAAGATCTCGAGGTTTTGGATTCATTACTTTTCAAACTGCCGAGGATGTAGAGGCTGCTTTGAATGCTATGAACGGCGTGGAGATTGAAGGTCGACCTATAAGGTTGAATTTGGCTTCAGAGAAATCTCCTCCAAGAAGTAATGTTGATAGCTCAGAATTGTATTCTAGTGCCAGTACATGA | 915 | 0.471 | MAAATASVSYSSSSICNRIYNPTFTHTSISLTTNFPHRPISYKPLTFNPKPQSFNLFPLPLHPSSAAFDGFEASQEQEQEPEETSEAPQQQQEEQRVSDSSDSGRLYVGNLPYSITSTELSELFGEAGTVVSVEIVYDRVTDRSRGFAFVTMGSVGDAQEAIRMFDGSQVGGRTVKVNFPEVPKGGERLVMGPKIRNNSRGFVDSPHKLYAGNLGWRLTSEGLRDAFADQPGLLSAKVIYERDSGRSRGFGFITFQTAEDVEAALNAMNGVEIEGRPIRLNLASEKSPPRSNVDSSELYSSAST | 304 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc5g00016 | 304 | PANTHER | OS02G0815200 PROTEIN | 45 | 290 | - | - | |
Stsc5g00016 | 304 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 207 | 285 | IPR000504 | GO:0003723 | |
Stsc5g00016 | 304 | Gene3D | - | 192 | 295 | IPR012677 | - | |
Stsc5g00016 | 304 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 104 | 182 | IPR000504 | GO:0003723 | |
Stsc5g00016 | 304 | MobiDBLite | consensus disorder prediction | 71 | 105 | - | - | |
Stsc5g00016 | 304 | FunFam | 33 kDa ribonucleoprotein, chloroplastic | 189 | 293 | - | - | |
Stsc5g00016 | 304 | CDD | RRM2_NsCP33_like | 208 | 283 | - | - | |
Stsc5g00016 | 304 | MobiDBLite | consensus disorder prediction | 285 | 304 | - | - | |
Stsc5g00016 | 304 | SMART | rrm1_1 | 105 | 178 | IPR000504 | GO:0003723 | |
Stsc5g00016 | 304 | SMART | rrm1_1 | 208 | 281 | IPR000504 | GO:0003723 | |
Stsc5g00016 | 304 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 106 | 176 | IPR000504 | GO:0003723 | |
Stsc5g00016 | 304 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 209 | 279 | IPR000504 | GO:0003723 | |
Stsc5g00016 | 304 | SUPERFAMILY | RNA-binding domain, RBD | 99 | 181 | IPR035979 | GO:0003676 | |
Stsc5g00016 | 304 | MobiDBLite | consensus disorder prediction | 84 | 105 | - | - | |
Stsc5g00016 | 304 | Gene3D | - | 64 | 188 | IPR012677 | - | |
Stsc5g00016 | 304 | MobiDBLite | consensus disorder prediction | 283 | 304 | - | - | |
Stsc5g00016 | 304 | CDD | RRM1_PSRP2_like | 105 | 184 | - | - | |
Stsc5g00016 | 304 | SUPERFAMILY | RNA-binding domain, RBD | 204 | 292 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc5g00016 | Stsc-Chr5 | 110686 | 112664 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc5g00016 | 100 | 299 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 28.571 | 9.41e-16 | 75.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc5g00016 | - | - | gmx:100799014 | 406.371 |