Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc5g00016 ATGGCTGCTGCTACAGCTTCTGTTTCCTATTCTTCTTCTTCTATCTGCAACAGAATCTACAACCCCACCTTCACCCACACTTCAATTTCACTCACAACTAACTTCCCTCACAGACCCATCTCTTACAAACCCCTCACCTTCAACCCCAAGCCCCAAAGTTTCAATCTTTTCCCTCTCCCTCTTCACCCTTCCTCCGCTGCATTCGATGGATTCGAAGCCTCTCAAGAACAAGAACAAGAACCAGAAGAGACCTCTGAAGCACCGCAACAACAACAAGAAGAGCAAAGGGTTTCAGATTCCAGTGACTCTGGGAGGCTCTATGTTGGAAACTTGCCTTATTCAATCACCTCCACCGAATTGTCCGAGCTCTTTGGAGAAGCTGGCACTGTTGTGTCTGTTGAGATTGTGTACGATCGTGTCACGGATAGAAGCAGAGGATTTGCATTTGTTACAATGGGGAGTGTTGGTGATGCTCAAGAAGCAATTCGAATGTTTGATGGCTCCCAAGTTGGCGGTAGGACTGTCAAGGTAAACTTCCCGGAAGTGCCCAAGGGAGGTGAAAGGTTGGTAATGGGGCCGAAAATTAGGAACAACTCCAGAGGCTTTGTAGACAGCCCTCACAAGCTTTATGCTGGAAACCTTGGTTGGAGACTGACTTCGGAGGGTCTTCGAGATGCCTTCGCTGACCAGCCAGGCTTATTGAGTGCCAAGGTCATCTATGAGAGGGACTCTGGAAGATCTCGAGGTTTTGGATTCATTACTTTTCAAACTGCCGAGGATGTAGAGGCTGCTTTGAATGCTATGAACGGCGTGGAGATTGAAGGTCGACCTATAAGGTTGAATTTGGCTTCAGAGAAATCTCCTCCAAGAAGTAATGTTGATAGCTCAGAATTGTATTCTAGTGCCAGTACATGA 915 0.471 MAAATASVSYSSSSICNRIYNPTFTHTSISLTTNFPHRPISYKPLTFNPKPQSFNLFPLPLHPSSAAFDGFEASQEQEQEPEETSEAPQQQQEEQRVSDSSDSGRLYVGNLPYSITSTELSELFGEAGTVVSVEIVYDRVTDRSRGFAFVTMGSVGDAQEAIRMFDGSQVGGRTVKVNFPEVPKGGERLVMGPKIRNNSRGFVDSPHKLYAGNLGWRLTSEGLRDAFADQPGLLSAKVIYERDSGRSRGFGFITFQTAEDVEAALNAMNGVEIEGRPIRLNLASEKSPPRSNVDSSELYSSAST 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc5g00016 304 PANTHER OS02G0815200 PROTEIN 45 290 - -
Stsc5g00016 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Stsc5g00016 304 Gene3D - 192 295 IPR012677 -
Stsc5g00016 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Stsc5g00016 304 MobiDBLite consensus disorder prediction 71 105 - -
Stsc5g00016 304 FunFam 33 kDa ribonucleoprotein, chloroplastic 189 293 - -
Stsc5g00016 304 CDD RRM2_NsCP33_like 208 283 - -
Stsc5g00016 304 MobiDBLite consensus disorder prediction 285 304 - -
Stsc5g00016 304 SMART rrm1_1 105 178 IPR000504 GO:0003723
Stsc5g00016 304 SMART rrm1_1 208 281 IPR000504 GO:0003723
Stsc5g00016 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 176 IPR000504 GO:0003723
Stsc5g00016 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 279 IPR000504 GO:0003723
Stsc5g00016 304 SUPERFAMILY RNA-binding domain, RBD 99 181 IPR035979 GO:0003676
Stsc5g00016 304 MobiDBLite consensus disorder prediction 84 105 - -
Stsc5g00016 304 Gene3D - 64 188 IPR012677 -
Stsc5g00016 304 MobiDBLite consensus disorder prediction 283 304 - -
Stsc5g00016 304 CDD RRM1_PSRP2_like 105 184 - -
Stsc5g00016 304 SUPERFAMILY RNA-binding domain, RBD 204 292 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc5g00016 Stsc-Chr5 110686 112664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc5g00016 100 299 Eukaryotic Initiation Factors Gene Family AT3G16380 28.571 9.41e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc5g00016 - - gmx:100799014 406.371