Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc5g00015 ATGAACGACTTGCTCTCTCCAGCGCGGGACAATAACCACCATGTGATCGAGATGGCCGAAACGACGCCGTCTGTAGAGAACAATCTAAACAAATTCTTCGAAGAAGTTGAATCCCTGAAACAGGAGCTGAGGGAGCTCGAGAACATCCACAACAGCCTCCGGGCCTCCAACGAGAAGAGCAAGGCCCTTCACACCGCAAAAGATGTGAAGGACCTTCGCTCTCGCATGGACACTGATGTCACCACGGCCCTCAAGAAGGCCAGGGTCATCAAGGCCCGGTTGGAGGCTCTTGACCGGGCCAACGAGGCTAGTCTCTCCGTGTCCGGTTGTGGGCCTGGTTCCTCCTCTGACCGGACACGGACTTCTGTGGTGAATGGGCTGAGAAAGAAGCTGAAGGAGTCCATGGAGAGCTTCAACAAACTCAGGGATCAGATATCGTCCGAGTATAGGAACACCGTACAACGCCGCTACTACACTGTCACCGGCGAGAATCCTGATGATAAAACCATTGACCTTCTCATCTCTACCGGTGAGAGTGAAAGTTTCCTGCAGAAAGCTATCCAGCAGCAAGGGAGAGCGACGGTGATGAACACAATTCAAGAGATTCAAGAGAGGCACGGTGCGGTGAAAGAGATAGAGAGGAACCTTAACGAGCTTCACCAGGTGTTCTTGGACATGTCAGTGTTGGTCCAAACACAGGGTGAACAACTCGACGACATCGAGAGCCACATGGCACGTGCTAATTCCTACGTCAGGGGTGGCGTACAGCAACTCCAAGTTGCCAGAAAGCACCAGAAGAACTCTCGCAAGTGGACCTGTATTGCCATCATATTGCTTCTCATAATTGCCTTGGCTATAATCCTTCCCCTAGTTTTGAAAAACTGA 885 0.5164 MNDLLSPARDNNHHVIEMAETTPSVENNLNKFFEEVESLKQELRELENIHNSLRASNEKSKALHTAKDVKDLRSRMDTDVTTALKKARVIKARLEALDRANEASLSVSGCGPGSSSDRTRTSVVNGLRKKLKESMESFNKLRDQISSEYRNTVQRRYYTVTGENPDDKTIDLLISTGESESFLQKAIQQQGRATVMNTIQEIQERHGAVKEIERNLNELHQVFLDMSVLVQTQGEQLDDIESHMARANSYVRGGVQQLQVARKHQKNSRKWTCIAIILLLIIALAIILPLVLKN 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc5g00015 294 PANTHER SYNTAXIN 33 280 IPR045242 -
Stsc5g00015 294 MobiDBLite consensus disorder prediction 107 122 - -
Stsc5g00015 294 Pfam Syntaxin 31 234 IPR006011 GO:0016020
Stsc5g00015 294 CDD SNARE_syntaxin1-like 198 259 - -
Stsc5g00015 294 ProSitePatterns Syntaxin / epimorphin family signature. 205 244 IPR006012 GO:0005484|GO:0006886|GO:0016020
Stsc5g00015 294 Gene3D - 25 154 - -
Stsc5g00015 294 FunFam Syntaxin 132 192 292 - -
Stsc5g00015 294 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 26 156 - -
Stsc5g00015 294 SMART SynN_4 24 150 IPR006011 GO:0016020
Stsc5g00015 294 CDD SynN 29 186 IPR006011 GO:0016020
Stsc5g00015 294 SUPERFAMILY t-snare proteins 27 254 IPR010989 GO:0016020|GO:0016192
Stsc5g00015 294 Pfam SNARE domain 235 287 IPR000727 -
Stsc5g00015 294 SMART tSNARE_6 194 261 IPR000727 -
Stsc5g00015 294 Coils Coil 29 63 - -
Stsc5g00015 294 Gene3D - 188 292 - -
Stsc5g00015 294 Coils Coil 124 148 - -
Stsc5g00015 294 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 199 261 IPR000727 -
Stsc5g00015 294 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc5g00015 Stsc-Chr5 103737 106348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc5g00015 28 273 SNARE and Associated Proteins AT3G11820 71.138 2.18e-130 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc5g00015 K08486 - gmx:100808718 425.246