Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc5g00006 ATGTCCACCACCTTCTCTCTCCTCCTCTTCCTCCTTCTCCTCTCCGCCCCCTATCTCCGAGCAGAAACCGACCCCAATGACGTTACCATCCTCCGCCAGTTCCGAAAAGGACTTGACGACCCTAAGCTCCTTCCATGGCCTGAAGATGGAGGCGACCCATGCGGCACTCCTCGCTGGGACTACATCTTCTGTGACGGAAACAGAGTGGCTCAGATTCAAGCCAAGAATCTCAACCTCTCTGGCCCTTTGCCCTCCAGCTTCAACCAACTCACCGCACTTACCAACGTTGGCCTCCAGAATAACCGTCTCAACGGTCCTTTACCTTCTTTCAAGGGTTTGAAGAACCTCAAGTACTTGTTCTTGGACTACAACAACTTCGATTCTCTACCCTCAGATTGCTTCGACGGTCTCGATAGCTTGGAGGTTCTTGCGTTGGATCACAACAACCTCAATGCCACTAATGGCGGCTGGACTCTCCCGCCGAGTCTTCAGGGCTCCACTCAGTTGACCAATTTCTCTTGTATGAGTTGCAATTTGGTGGGTTCCTTGCCGGATTTTCTGGGGAAGATGGACTCTCTCTCGTTCCTGAAACTTTCCGGCAACAATTTGACGGGAGAGTTGCCGGGGACGCTAAACGGCACCGTGTTGCAGGTTCTGTGGCTGAACAACCAGCAGGGTGAGGGGCTTACAGGGACAATTGATGTGGTTGCCACCATGGTTTCGCTGACAAGTGTGTGGCTTCATGGAAACAAATTCAGTGGGTCGATTCCGGAGAACATTGGGGACTTGGATTCGTTGAAGGATCTTAATCTCAACGGGAACCAGCTAGTTGGGCTTGTACCTGATGCATTAGGTAACATGAAATTGGACTCTCTTAATTTGAACAATAACCATTTCATGGGTCCTATCCCTGATTTCAAAGCTGTTAATGTTACTTTTGCTAACAATGATTTTTGTCAAGAGAAGCCTGGGATTCCATGCGCCTTTGAGGTCATGGCACTCCTGCAATTTCTTGGTGGGTTGAATTATCCTTCTAATCTGCTGGATTCTTGGACTGGTAATGACCCTTGTTCAAGTCCATGGTTGGGAATCAAGTGTAATGATAACGGCAAGGTTTCTATGATTAATTTGCCGAATTTTAAGTTTAATGGGACCTTGAGTCCTTCTGTTGCAAATTTGGGTTCTCTTACTGAAATTAGGTTGAATGATAACAATATTGGTGGTGTGGTACCTAGTAATTGGACTAACTTGTCGTCTCTTTCGTTGTTGGATCTGAGTGGCAATAACATTGCTGGTCCAGTGCCCAAGTTTCGCACCGGAGTGAAAGTTGTGACTGTTGGGAATCCCCTCTTGGATCCACACTCCCGAGCTCCTTCATCTGGGAACAATAATCCGTCGTCTGGATCTGGGAACGATGAGCCTTCATCAGGGTCTACACCTGCACACTCGAATAACAATCCGAGTAGTTCTAATGAAGCAAAGAAATCCAAAGGCAAAGCGTTGGTTACGATTGTTGCCCCCATTGCCGGTGTGGCAGCTGTAGCTTTTGTGCTCATTCCAATTTATGTGTACTGTTTCAGGAGAAGAAGGAAGGATTCTTTATTGGCTCCGAGTTCATTGGTGATTCACCCAAGAGATCCATCTGATTCGGACCGTATTGTAAAGATTGCTGTTGCTAATAATACCAATGGAAGCCTTTCAACTCTAACAGGGAGTGGCTCTGGGAGTCGAAACAGCAGTGGGATTGGGGAGTCTCATGTCATTGAAGCTGGCAATCTTGTGATATCTGTTCAGGTTCTACGAAATGTGACCAAGAATTTTGCCTCCGAGAATGAGCTTGGTCGTGGTGGGTTTGGTGTTGTTTATAAGGGAGAATTGGATGATGGCACTAAAATTGCGGTGAAGCGAATGGAAGCTGGTGTTATTAGTAACAAAGCCTTAGATGAATTCCAGGCTGAAATTGCAGTTCTATCAAAAGTTAGACACCGGCATCTAGTGTCCCTTTTGGGTTATTCCATTGAAGGCAATGAGAGAATTCTAGTTTATGAGTATATGCCTCAAGGTGCACTAAGTAAACATCTTTTCCATTGGAAGAGCTTTGGAATGGAGCCACTCTCTTGGAAGAGGAGGCTCAATATTGCCCTGGATGTTGCTAGAGGACTGGAGTACCTTCATTGTATGGCCCACCAAAGCTTCATTCACAGAGATCTTAAGTCATCGAATATCTTGCTTGCTGATGATTTCAGAGCAAAAATCTCAGATTTTGGATTGGTAAAACTTGCTCCTGAAGGTGAAAAGTCTGTAGTGACCCGGCTTGCTGGGACTTTCGGATACTTGGCGCCAGAATATGCAGTGACTGGAAAAATCACCACCAAAGCAGATGTTTTCAGCTTTGGGGTTGTGCTAATGGAGCTGTTGACAGGACTGATGGCACTTGATGAGGGTAGACCTGAGGAAAGCCAATACTTGGCAGCATGGTTCTGGCATATAAAATCAGACAAGAAGAAACTAAGGGCTGCCATTGATCAATCCCTTGACATAAAAGATGAAACATTCGAGACCATCTCTGTCATTGCTGAGTTGGCTGGACACTGCACTGCCAGAGAACCAAGCCAACGACCCGATATGGGTCATGCCGTGAATGTTCTGGCACCCCTCGTTGAAAAATGGAAACCATTTGATGACGACACTGAGGAATATTCTGGCATCGATTACAGTCTTCCTCTTAACCAGATGGTGAAGGACTGGCAGGAGGCAGAAGGAAAGGACTTGAGTTATATGGACTTGGAAGACAGCAAGAGTAGCATCCCTGCAAGGCCTACTGGATTTGCAGATTCTTTTACTTCGGCTGATGGCAGGTGA 2862 0.4647 MSTTFSLLLFLLLLSAPYLRAETDPNDVTILRQFRKGLDDPKLLPWPEDGGDPCGTPRWDYIFCDGNRVAQIQAKNLNLSGPLPSSFNQLTALTNVGLQNNRLNGPLPSFKGLKNLKYLFLDYNNFDSLPSDCFDGLDSLEVLALDHNNLNATNGGWTLPPSLQGSTQLTNFSCMSCNLVGSLPDFLGKMDSLSFLKLSGNNLTGELPGTLNGTVLQVLWLNNQQGEGLTGTIDVVATMVSLTSVWLHGNKFSGSIPENIGDLDSLKDLNLNGNQLVGLVPDALGNMKLDSLNLNNNHFMGPIPDFKAVNVTFANNDFCQEKPGIPCAFEVMALLQFLGGLNYPSNLLDSWTGNDPCSSPWLGIKCNDNGKVSMINLPNFKFNGTLSPSVANLGSLTEIRLNDNNIGGVVPSNWTNLSSLSLLDLSGNNIAGPVPKFRTGVKVVTVGNPLLDPHSRAPSSGNNNPSSGSGNDEPSSGSTPAHSNNNPSSSNEAKKSKGKALVTIVAPIAGVAAVAFVLIPIYVYCFRRRRKDSLLAPSSLVIHPRDPSDSDRIVKIAVANNTNGSLSTLTGSGSGSRNSSGIGESHVIEAGNLVISVQVLRNVTKNFASENELGRGGFGVVYKGELDDGTKIAVKRMEAGVISNKALDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERILVYEYMPQGALSKHLFHWKSFGMEPLSWKRRLNIALDVARGLEYLHCMAHQSFIHRDLKSSNILLADDFRAKISDFGLVKLAPEGEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDEGRPEESQYLAAWFWHIKSDKKKLRAAIDQSLDIKDETFETISVIAELAGHCTAREPSQRPDMGHAVNVLAPLVEKWKPFDDDTEEYSGIDYSLPLNQMVKDWQEAEGKDLSYMDLEDSKSSIPARPTGFADSFTSADGR 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc5g00006 953 FunFam Receptor-like kinase TMK4 25 324 - -
Stsc5g00006 953 MobiDBLite consensus disorder prediction 455 495 - -
Stsc5g00006 953 PANTHER OSJNBA0070M12.3 PROTEIN 8 953 - -
Stsc5g00006 953 Gene3D Transferase(Phosphotransferase) domain 1 685 903 - -
Stsc5g00006 953 Gene3D Phosphorylase Kinase; domain 1 572 684 - -
Stsc5g00006 953 FunFam receptor protein kinase TMK1 569 684 - -
Stsc5g00006 953 ProSitePatterns Serine/Threonine protein kinases active-site signature. 732 744 IPR008271 GO:0004672|GO:0006468
Stsc5g00006 953 FunFam receptor protein kinase TMK1 685 902 - -
Stsc5g00006 953 Pfam Leucine rich repeat 241 299 IPR001611 GO:0005515
Stsc5g00006 953 Pfam Leucine rich repeat 92 150 IPR001611 GO:0005515
Stsc5g00006 953 MobiDBLite consensus disorder prediction 448 495 - -
Stsc5g00006 953 Pfam Protein kinase domain 609 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc5g00006 953 SUPERFAMILY L domain-like 23 306 - -
Stsc5g00006 953 SMART serkin_6 607 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc5g00006 953 CDD STKc_IRAK 613 886 - -
Stsc5g00006 953 SUPERFAMILY L domain-like 330 437 - -
Stsc5g00006 953 MobiDBLite consensus disorder prediction 931 953 - -
Stsc5g00006 953 FunFam Leucine-rich repeat receptor-like kinase 329 454 - -
Stsc5g00006 953 Gene3D Ribonuclease Inhibitor 24 325 IPR032675 -
Stsc5g00006 953 Gene3D Ribonuclease Inhibitor 329 452 IPR032675 -
Stsc5g00006 953 ProSitePatterns Protein kinases ATP-binding region signature. 613 635 IPR017441 GO:0005524
Stsc5g00006 953 SUPERFAMILY Protein kinase-like (PK-like) 583 883 IPR011009 -
Stsc5g00006 953 Pfam Leucine rich repeat N-terminal domain 331 367 IPR013210 -
Stsc5g00006 953 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Stsc5g00006 953 ProSiteProfiles Protein kinase domain profile. 607 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc5g00006 953 SMART LRR_typ_2 393 416 IPR003591 -
Stsc5g00006 953 SMART LRR_typ_2 417 439 IPR003591 -
Stsc5g00006 953 SMART LRR_typ_2 190 213 IPR003591 -
Stsc5g00006 953 SMART LRR_typ_2 137 165 IPR003591 -
Stsc5g00006 953 SMART LRR_typ_2 263 286 IPR003591 -
Stsc5g00006 953 SMART LRR_typ_2 113 136 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc5g00006 Stsc-Chr5 62638 66466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc5g00006 79 920 Receptor kinase-like Gene Family AT1G55610 30.553 8.46e-83 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Stsc5g00006 Pkinase 9.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc5g00006 K00924 - gmx:100305366 1419.83