Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc5g00003 ATGGCGACGTACTTTCACGGCAATTCAGAAATCCAACCACCTTCTTCTGCTGATGGACTCCAAACACTTGTTCTCATGAACCCTCCTCCTCCTGCTGCCTACATCCACTACCCTGACCCGCCACCACCATCTCACGCTCTCTTTCTCAACTCTTCCGCCACCGCCGGGAACAACTCCTTCTCACCTCACACCCAACAGTTCGTTGGTATCCCCCTCGCCGCCGCCTCGTCCTCGCAGGACATCAACCACCACCACGACGTCTCCGCCCTGCATGGCTTCTTCCCCCGCATGCAGTACAACCCCTGGACCACCATGGACCCCACCTCGGCGGCGCGTGACACTCCACGCGCCCAGCAGGGTCTGTCCCTGAGCCTGTCCTCTCAGCAAGCCGGGTTTGGTTCTTTCAGGGTCGACCGTGACGTGCCGCCGCAGGGCCAGGCGCAGGCTGTGTCCGGCGACGAGCTTCGCGGTGGAGGTGGGTCAACGTCTTCAGCTTCGGGGGTGACGAACGGGGGCTCGAGCATTCAGAGCGTGCTTCTGAGCTCAAAGTATGTGAAGGCAGCGCATGAGCTTCTGGAAGAGGTTGTCAATGTTAACAACAACAACAACAATGGTGTTAACTCTGAGTTGGCGACCAGAAAGAGCATCAAGACAGTTGGAGAGTCATCGACGGCAGCCAGCGGAGACGGTTCCATTGGTGGGGAAGGCAGCGGGAAGCCTAGCTCAGAGCTCTCCACAGCAGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGTTACTCAGCATGCTTGAGGAGGTGGAGCAAAGGTACCGACAGTACCACCACCAGATGGAGATAGTGGTGTCATCGTTCGAGCAAGCGGCCGGAGTAGGGTCGGCGAGGACTTACACGGCTCTTGCATTGCAAACAATTTCGAAGCAGTTTAGGTGCTTGAAGGATGCCATAACAAGGCAGATCAAAGCTGCAAACAAGAGCTTAGGAGAGGAAATGGAAGGGTCACGCCTTAAATATGTTGACCATCACTTACGGCAACAGAGAGCTCTCCAACAATTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGCTTGCCTGAACGTTCTGTTTCTCTTCTTCGTGCTTGGCTCTTCGAACACTTCCTCCACCCCTATCCCAAGGATTCTGACAAGCACATGCTTGCAAAACAAACAGGCCTTACTAGGAGCCAGGTTTCAAACTGGTTTATAAATGCACGAGTTAGACTGTGGAAGCCAATGGTGGAAGAAATGTATGCAGAGGAGATGAAGGATCATGAGCTCAACAACATTGGTGCTAGTACTAATTCTGAGGACAAATCAACCAAGACCAACAACGAAGATCCTTCAACAAATATTGCACCACCACTACAAGACAAAGTTCCAACATCTGAAACACATTCTGAAAAACAGGACCACAACACTCCAATGGTGTCATCAGTTGAAGGGGACATGAGAAACCAAGCAGGGTTCAGCTTTATCATGGGATCATCAGAACTAGAAGGAATCACGCAACACCAACAGGGGAATAGTCCCAAGAAACCAAGAATCAACAACAATGAAACAATGCATAATTCCCAAAGTAACATTCCTTCAATGAGCATGATGGATGTGAAGCCGAATGAGCAGGGGAGGCAAGGTTACTCTTTCATGGGGAACCAAACTAACTTCATTAGTGGTTTTGGACAGTACCCTACAATTGGGGACATTGGTAGGTTTGATCCTGAACAATTCACAACAGCACCAACAACAAGATTTTCAGGGAATGGAGTTTCCCTCACTCTTGGTCTTGATTCATTGCCTGGAACACACCACCATACTTTTCTACCAAACCAGAACATTCAACTCGGAAGAAGCATCGATATCGCGGAACCAAACGATTTCGTTGGTGCCATGAACACTTCTTCATCTCCTCACTCCTCTGCTGCTGCTGCTGCTGCATTTGAGGGCATTGGCATGCAGAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGGCATAA 2028 0.5054 MATYFHGNSEIQPPSSADGLQTLVLMNPPPPAAYIHYPDPPPPSHALFLNSSATAGNNSFSPHTQQFVGIPLAAASSSQDINHHHDVSALHGFFPRMQYNPWTTMDPTSAARDTPRAQQGLSLSLSSQQAGFGSFRVDRDVPPQGQAQAVSGDELRGGGGSTSSASGVTNGGSSIQSVLLSSKYVKAAHELLEEVVNVNNNNNNGVNSELATRKSIKTVGESSTAASGDGSIGGEGSGKPSSELSTAERQEIQMKKAKLLSMLEEVEQRYRQYHHQMEIVVSSFEQAAGVGSARTYTALALQTISKQFRCLKDAITRQIKAANKSLGEEMEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSLLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYAEEMKDHELNNIGASTNSEDKSTKTNNEDPSTNIAPPLQDKVPTSETHSEKQDHNTPMVSSVEGDMRNQAGFSFIMGSSELEGITQHQQGNSPKKPRINNNETMHNSQSNIPSMSMMDVKPNEQGRQGYSFMGNQTNFISGFGQYPTIGDIGRFDPEQFTTAPTTRFSGNGVSLTLGLDSLPGTHHHTFLPNQNIQLGRSIDIAEPNDFVGAMNTSSSPHSSAAAAAAFEGIGMQNPKRFAAQLLPDFVA 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc5g00003 675 ProSiteProfiles 'Homeobox' domain profile. 356 419 IPR001356 GO:0003677
Stsc5g00003 675 MobiDBLite consensus disorder prediction 219 248 - -
Stsc5g00003 675 FunFam BEL1-like homeodomain protein 9 362 424 - -
Stsc5g00003 675 Coils Coil 249 276 - -
Stsc5g00003 675 SMART HOX_1 359 423 IPR001356 GO:0003677
Stsc5g00003 675 CDD homeodomain 359 420 IPR001356 GO:0003677
Stsc5g00003 675 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 104 444 - -
Stsc5g00003 675 MobiDBLite consensus disorder prediction 157 171 - -
Stsc5g00003 675 MobiDBLite consensus disorder prediction 435 468 - -
Stsc5g00003 675 Coils Coil 674 675 - -
Stsc5g00003 675 SMART prehox3 173 317 IPR006563 -
Stsc5g00003 675 SUPERFAMILY Homeodomain-like 360 426 IPR009057 -
Stsc5g00003 675 MobiDBLite consensus disorder prediction 432 487 - -
Stsc5g00003 675 Pfam Homeobox KN domain 376 415 IPR008422 GO:0003677|GO:0006355
Stsc5g00003 675 Pfam Associated with HOX 178 316 IPR006563 -
Stsc5g00003 675 Gene3D - 355 433 - -
Stsc5g00003 675 MobiDBLite consensus disorder prediction 135 171 - -
Stsc5g00003 675 MobiDBLite consensus disorder prediction 510 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc5g00003 Stsc-Chr5 17569 20074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc5g00003 1 675 Homeobox Transcription Factor Family AT2G35940 46.774 2.40e-165 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc5g00003 POX 1.7e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc5g00003 - - aip:107622581 1029.62