Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc5g00001 ATGGAAAACGAGAGCATGGAAAACGAGATCGAAGTTCCTCCATTCTTTCTCTGCCCAATCTCGCTTGAAATCATGAGAGATCCCGTAACCGTCTCCACCGGCATCACCTACGACAGAGAGAGCATCGAGACGTGGCTATTCTCCGGCAAGAACAAGACCTGCCCCGTCACAAAGCAACAACTCTCTTCTTCTGATTTCTCAGATCTAACTCCAAACCACACTCTTCGGCGGTTGATTCAGTCCTGGTGTACAATAAACGCTTCCCACGGCATCGAAAGGATCCCCACACCTAAACCGCCGGTCAACAAAAACCAGATCTCCAAGCTCCTCAAAGAAGCTTCGCGTTCCACCACTCTCAACCAGATCGTAAACTCTCTCAGAAACCTCAAATCCATTGCTTCTGGAAGCGAAACCAACAAAAGGTGCATGGAAGCCGCTGGTGCCGTTGATTTCTTGGCTTCCGTTGTCAACAACAACATCGATTATCCTTCTTCTGAAGAAGACAACAACGACGATGAAGCTTTGAAGAATAGTCCCTCGGATGAAGCAGTAAGCATGCTCTACAATCTTCACGTATCCGAAGCTGGATTGAAGAATCTCATAGGATTCAAGAACGGAGAGTTTGTGAGTTCTTTAACGAGAATCTTGCAGAAAGGAACATACGAGTCAAGAGCTTACGCAGTTTTCTTGCTGAAATCAATGTTTGAGGTGGCTGAACCTGTGCACCTTCTTCACCTAGGAACCGAGTTATTCGTGGAGCTAGTGCAGGTTTTGAAGGACCAGATTTCTCACAAGGCAACAAAAGCCGCCCTCCACGCCCTGATCCAGATCTCTCCATGGGGGAGAAACAGGGTCAGAGCAGCGGAGGCCGGTGCAGTTGCCGTTCTCGTAGAGCTTCTTCTTGAAATCAAAGAGAGGAAGCCCTGCGAGATGATGCTAGTTTTGTTAGAGTTACTCTGCCAGTGTGCGGAGGGAAGAGCGGAGCTATTGAACCATGGAGCGGGACTGGCCATTGTTTCGAAGAAGATTCTTAGGGTTTCGACGCTGGGCAACGACAGGGCGGTGAAGATTCTTTTGTCCGTTGCGAAATTCTCAGCGACAGCGGTGGTTGTTCAGGAGATGCTGAAGCTTGGTGTGGTGGCGAAGCTGTGCTTGACTCTTCAGGTGGATAGTGGAAGCAAGACGAAGGAGAAGGCGAGGGAGATTCTGAAGCTTCATGCTAAGGCATGGAAGAATTCTCCATGCATTCCTACCAATTTGGCTTCTGCATACCCGGCTTTTGTTTGA 1287 0.4887 MENESMENEIEVPPFFLCPISLEIMRDPVTVSTGITYDRESIETWLFSGKNKTCPVTKQQLSSSDFSDLTPNHTLRRLIQSWCTINASHGIERIPTPKPPVNKNQISKLLKEASRSTTLNQIVNSLRNLKSIASGSETNKRCMEAAGAVDFLASVVNNNIDYPSSEEDNNDDEALKNSPSDEAVSMLYNLHVSEAGLKNLIGFKNGEFVSSLTRILQKGTYESRAYAVFLLKSMFEVAEPVHLLHLGTELFVELVQVLKDQISHKATKAALHALIQISPWGRNRVRAAEAGAVAVLVELLLEIKERKPCEMMLVLLELLCQCAEGRAELLNHGAGLAIVSKKILRVSTLGNDRAVKILLSVAKFSATAVVVQEMLKLGVVAKLCLTLQVDSGSKTKEKAREILKLHAKAWKNSPCIPTNLASAYPAFV 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc5g00001 428 Gene3D - 98 417 IPR011989 -
Stsc5g00001 428 PANTHER WDSAM1 PROTEIN 8 417 IPR045185 GO:0061630
Stsc5g00001 428 SMART Ubox_2 15 82 IPR003613 GO:0004842|GO:0016567
Stsc5g00001 428 CDD RING-Ubox_PUB 13 66 IPR045210 -
Stsc5g00001 428 FunFam RING-type E3 ubiquitin transferase 6 92 - -
Stsc5g00001 428 ProSiteProfiles U-box domain profile. 11 89 IPR003613 GO:0004842|GO:0016567
Stsc5g00001 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 93 IPR013083 -
Stsc5g00001 428 Pfam U-box domain 12 84 IPR003613 GO:0004842|GO:0016567
Stsc5g00001 428 SUPERFAMILY RING/U-box 6 89 - -
Stsc5g00001 428 SUPERFAMILY ARM repeat 99 340 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc5g00001 Stsc-Chr5 4709 5995 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc5g00001 6 426 U-box Gene Family AT3G52450 57.273 4.66e-176 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc5g00001 - - aip:107624094 642.884