Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc598g00005 ATGTGTGGAGGTGCTATCATCTCAGACTTCATTGGCGTCAAGCGTGGTCGGAAATTGCTCTCTCAGGAGCTATGGGCTGAGCTTGATCCTTTCGCCGACTTCCTTTCTTTTGACGCCGCCATACCCAACAACAAGGATCACCCACCACCACCACCACTTTCTCAAATCCCTCATAACAACAGCAAAGTGGTAGCATGTGACAAGGTACTAGGAAAGGAAAAAACGGTTGTTGATGATGGTGCGGAAGATAACAACAAGAAGGGTCATGCATCATCCAAGAAGGTTCCAAATCAGCGTCAGAGGGTTCGTAAGAACGTGTACAGGGGAATCAGGCAGAGGCCATGGGGCAAGTGGGCCGCAGAGATAAGGGACCCACACAAGGGGATCCGTGTCTGGCTCGGCACGTTTAATACGGCTGAGGAGGCCGCTAGGGCCTACGACGATGCTGCCAAACGCATCCGAGGAAAGAAAGCCAAGCTTAACTTCCCGGATGAGGGCAACGTCGTCGTAGCCCCTCCAGCGGCCAAGAAGCAGTGCCTTGGCAATGATATGCTGTGTCAAGCTGAGACTGATCCTTCTCTCGTGTTAACACCTATCTCTGCCATGCAAACTGGCAGTGATGATGGGAGCACAGAGGGATCAGTATCAGAATCTAACCTGACACAGCAGATCTCGGATCTTGAATGGTTCCTCGGACTAGAGAACGAGCAACCGTCGCAAATAATGGGTGGTGATGTCATTTGGAACAACATTAACAACAATGATAACAACAACAATAACATGGACCTGTGGATGCTGGACGACGTCGTTATGCCCAACCGTTACATGGTGTAA 834 0.5048 MCGGAIISDFIGVKRGRKLLSQELWAELDPFADFLSFDAAIPNNKDHPPPPPLSQIPHNNSKVVACDKVLGKEKTVVDDGAEDNNKKGHASSKKVPNQRQRVRKNVYRGIRQRPWGKWAAEIRDPHKGIRVWLGTFNTAEEAARAYDDAAKRIRGKKAKLNFPDEGNVVVAPPAAKKQCLGNDMLCQAETDPSLVLTPISAMQTGSDDGSTEGSVSESNLTQQISDLEWFLGLENEQPSQIMGGDVIWNNINNNDNNNNNMDLWMLDDVVMPNRYMV 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc598g00005 277 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Stsc598g00005 277 PANTHER DNA-BINDING DOMAIN 88 206 IPR044808 GO:0003700|GO:0009873
Stsc598g00005 277 CDD AP2 107 164 IPR001471 GO:0003700|GO:0006355
Stsc598g00005 277 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
Stsc598g00005 277 FunFam Ethylene-responsive transcription factor 2 105 164 - -
Stsc598g00005 277 MobiDBLite consensus disorder prediction 76 103 - -
Stsc598g00005 277 SUPERFAMILY DNA-binding domain 106 164 IPR016177 GO:0003677
Stsc598g00005 277 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Stsc598g00005 277 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Stsc598g00005 277 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Stsc598g00005 277 Gene3D AP2/ERF domain 106 164 IPR036955 GO:0003700|GO:0006355
Stsc598g00005 277 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc598g00005 Stsc-Chr598 23705 25980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc598g00005 1 270 AP2-EREBP Transcription Factor Family AT3G16770 41.497 2.53e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc598g00005 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc598g00005 K09286 - gmx:100817253 236.884