Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc598g00004 ATGGCGACTGAGCAGTTAATGTCCGACGGCGGCGCACACCGTTACTTCCCTATGAAATCGGAGCAGCCTCCGTCTCCTCCGGCGGCGGCGGAGGAGATGTCGTCTGTTCCGTCTTTCCGGCATGGAGGCGCCGGCGAAGCCACTCGGATTTTCGATGAACTTCCGAAGGCCACCATCGTCTCCGTCTCTCGCCCTGATGCCAGCGACATAAGCCCTATGCAGCTCTCTTACACCATTCAGTTTCAGTACAAACAGTTCAAGTGGGAGCTAGTGAAGAAAGCTTCTCAAGTATTTTATTTGCATTTTGCATTAAAGAAGCGTGCCTTTTTTGAGGAAATTCATGAGAAGCAAGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATAGGAGAGCACACTACTATGGTGCACGATGATGATGAAGCTGATGATGAAACATTTGCATCACATGCTGATGAATATGCGAAAAACAGAGATGTTCCATCAATTGCGGCTCTACCAATTATACGACCAGCCTTAGGTAGGCAGCAGTCTGTGTCAGACAGGGCAAAGAGTGCAATGCAAGGATATTTGAATCACTTTTTGGGAAATATCAGTATTGTTAACTCTCCAGAGGGGTTGATTGTGTCGGTGGAAAAGCTTACAAATGTCTGCAGGTTTTTAGAGGTATCGAAGCTATCTTTTTTGCCTGAATATGGACCAAAACTGAAGGAAGATTATGTAATGGTGAAACATCTGCCCAAAATTCTAAAGGATGATGATTCCAGAAAGTGTTGTACTTCTAGCTGTTTTAGTTGTTGCAATGACAACTGGCAAAAGGTATGGGCTGTATTGAAACCTGGATTCTTGGCATTGCTGGCAGATCCTTTTGATATCCAGCCCTTAGACATTATTGTCTTTGATGTGCTACCTCCATCCGATGGGAATGGGGATGGTCGTTTGTCACTGGCTAGTGAAATAAAGGAACGAAATCCTTTACGGCATTCATTCAAGGTGACTTGTGGGGTCCGGAGCATTAGAATTAGAGGGAAAAGTAGCAGTAAAGTTAAAGATTGGGTAGCAGCTATTAATGATGCTGGACTTAGGCCTCCTGAAGGCTGGTGTCATCCTCACCGCTATGGGTCTTTTGCTCCCCCAAGAGGCTTGATTGAAGATGGTAGTCAAGCCCAGTGGTTCGTGGATGGCAAAGCAGCATTTGATGCAATTGCTTCTTCAATTGAGGACGCAAGATCAGAGATATTCATCTGTGGATGGTGGGTGTGCCCTGAACTGTATCTCAGGCGACCTTTTGACATTCATGCTTCATCAAGGCTTGATAATTTGTTGGAAGCAAAAGCTAAGCAAGGGGTTCAGATCTACATTCTTCTGTACAAAGAGGTGGCTCTTGCTTTGAAAATCAACAGTGTTTATAGCAAGAGAAAGCTTCTTAACATTCATGAGAACGTGAGGGTACTACGCTATCCTGATCACTTTTCTTCTGGTGTTTATCTGTGGTCACACCATGAAAAACTGGTCATTGTTGATAACCATATTTGCTTCATTGGAGGACTGGATTTGTGCTTTGGTCGTTATGACTCATCTGAACATAAAGTGGGGGATTGTCCTCCTCTAATCTGGCCTGGAAAGGACTTTTATAACCCTAGGGAATCTGAACCTAATTCATGGGAAGATACAATGAAAGATGAATTGGATCGTAGAAATTATCCTCGTATGCCTTGGCATGATGTTCATTGTGCCCTTTGGGGACCACCTTGTCGTGACATTGCTCGACACTTTGTTCAAAGATGGAATTATGCAAAGAGGAATAAAGCTCCATATGAGCAAGCAATACCTTTACTTATGCCTCAGCATCATATGGTTATTCCACATTACCTGGGAAGAAGCACTGAGATGGAAATTGAAAACAATAATGCTGACAATCATAGAGTCATCAAGAGAGAAGATTCATTTTCTTCATCATCCCAAGAACAAGATGTTCCTCTACTTTTGACTCATGATGAGTCTGAAGGAGACCCTAAATTGAATGGGCTAAGCTCATTTATACATCACCTTGATAAGCCGACAAAGGTTGGTAGTGGTCTTCCTTTCTCTTTCCGGAAGGTGAAAATTGAAGCTCTTGGTCAAGACACCCCAATGAAGGACTTTGTAGATGATCTTGGATATATGCATTATGGTGAGAAAAAGTCTCTGGATAGAGTGCCTCCCGTTGAGCAACAAAATACTGGTCCAGAATGGTGGGAAACACAAGAGCGGGGTGATCAGGGAGATTTTGCAGATGAATCAGGGCAAGTTGGCCCTCGTGTTTCCTGCCGTTGTCAGGTTGTTAGGAGCGTCAGTCAATGGTCTGCTGGAACAAGTCAAACGGAAGAGAGCATACACAATGCCTATTGTTCTCTTATTGAGAAAGCCGAATACTTCATCTACATTGAGAATCAATTTTTTATTTCAGGTCTTTCTGGAGATGAAATGATTCGAAACCGTGTTCTGGAAGCTTTATATCGACGGATTATGCTAGCTTACAATGAGAATAAATCCTTTAGGGTTATCATTGTCATACCTCTCCTACCTGGCTTCCAGGGGGGTCTTGATGATAGTGGTGCAGCATCTGTGAGAGCAATAATGCATTGGCAGTATCGAACCATTTGTAGAGGCCAAAATTCTATATTACATAATCTTTATGAACTTCTTGGTTCAAAAATACATGACTACATCTCCTTTTTTGGCTTGAGGTCTTATGGTAGACTTTTTGATGGTGGTCCTGTAGCAACCAGCCAGGTGTATGTTCACAGTAAAATCATGATTGTTGATGACCGCATAAGTTTGATTGGATCTGCTAATATTAATGATAGGAGCCTACTTGGATCTAGAGATTCTGAGATTGGAGTAGTTATAGAAGACAGAGAGTTAATTGGTTCTTATATGGATGGAAAGCCTTGGAAAGCAGGAAAGTTCTCGTTGACTCTCCGTTTGTCACTATGGGCTGAGCACTTGGGTCTACCTTTAGGAGAGGTCAATCAAATAATGGACCCAATTATTGAATCATCTTACAAAGATATTTGGATGGCAACAGCAAAGACAAATACTGCAATTTACCAGGATGTCTTTTCTTGTGTACCTAATGATCTAATACACACCAGACTTGCTTTTCGACAGAGCGTAGCCTTTTGGAAAGAAAGAGTTGGTCACACAACCATTGATTTAGGAATAGCGCCACAGAAATTAGAATCGTATCATAATGGAGATGTGAAGAACACCGATCCATTGGAGAGATTAGCATCAGTGAGAGGTCATCTTGTTTCTTTTCCCTTGGAGTTCATGTGTCAAGAAAGTCTAAGACCTGGTTTCAGTGAAAGCGAATATTACGCTGCTCAAGTTTTCCACTGA 3384 0.4249 MATEQLMSDGGAHRYFPMKSEQPPSPPAAAEEMSSVPSFRHGGAGEATRIFDELPKATIVSVSRPDASDISPMQLSYTIQFQYKQFKWELVKKASQVFYLHFALKKRAFFEEIHEKQEQVKEWLQNLGIGEHTTMVHDDDEADDETFASHADEYAKNRDVPSIAALPIIRPALGRQQSVSDRAKSAMQGYLNHFLGNISIVNSPEGLIVSVEKLTNVCRFLEVSKLSFLPEYGPKLKEDYVMVKHLPKILKDDDSRKCCTSSCFSCCNDNWQKVWAVLKPGFLALLADPFDIQPLDIIVFDVLPPSDGNGDGRLSLASEIKERNPLRHSFKVTCGVRSIRIRGKSSSKVKDWVAAINDAGLRPPEGWCHPHRYGSFAPPRGLIEDGSQAQWFVDGKAAFDAIASSIEDARSEIFICGWWVCPELYLRRPFDIHASSRLDNLLEAKAKQGVQIYILLYKEVALALKINSVYSKRKLLNIHENVRVLRYPDHFSSGVYLWSHHEKLVIVDNHICFIGGLDLCFGRYDSSEHKVGDCPPLIWPGKDFYNPRESEPNSWEDTMKDELDRRNYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKAPYEQAIPLLMPQHHMVIPHYLGRSTEMEIENNNADNHRVIKREDSFSSSSQEQDVPLLLTHDESEGDPKLNGLSSFIHHLDKPTKVGSGLPFSFRKVKIEALGQDTPMKDFVDDLGYMHYGEKKSLDRVPPVEQQNTGPEWWETQERGDQGDFADESGQVGPRVSCRCQVVRSVSQWSAGTSQTEESIHNAYCSLIEKAEYFIYIENQFFISGLSGDEMIRNRVLEALYRRIMLAYNENKSFRVIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLYELLGSKIHDYISFFGLRSYGRLFDGGPVATSQVYVHSKIMIVDDRISLIGSANINDRSLLGSRDSEIGVVIEDRELIGSYMDGKPWKAGKFSLTLRLSLWAEHLGLPLGEVNQIMDPIIESSYKDIWMATAKTNTAIYQDVFSCVPNDLIHTRLAFRQSVAFWKERVGHTTIDLGIAPQKLESYHNGDVKNTDPLERLASVRGHLVSFPLEFMCQESLRPGFSESEYYAAQVFH 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc598g00004 1127 SUPERFAMILY Phospholipase D/nuclease 351 616 - -
Stsc598g00004 1127 SMART PH_update 235 363 IPR001849 -
Stsc598g00004 1127 Gene3D Endonuclease Chain A 382 622 - -
Stsc598g00004 1127 SMART pld_4 496 523 IPR001736 GO:0003824
Stsc598g00004 1127 SMART pld_4 924 951 IPR001736 GO:0003824
Stsc598g00004 1127 FunFam Phospholipase 758 978 - -
Stsc598g00004 1127 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 924 951 IPR001736 GO:0003824
Stsc598g00004 1127 PANTHER PHOSPHOLIPASE D 207 1116 IPR015679 -
Stsc598g00004 1127 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 496 523 IPR001736 GO:0003824
Stsc598g00004 1127 PIRSF PLD_euk 623 1127 IPR016555 GO:0004630|GO:0006654|GO:0048017
Stsc598g00004 1127 PIRSF PLD_euk 48 628 IPR016555 GO:0004630|GO:0006654|GO:0048017
Stsc598g00004 1127 Pfam Phospholipase D Active site motif 496 523 IPR001736 GO:0003824
Stsc598g00004 1127 SUPERFAMILY PH domain-like 268 359 - -
Stsc598g00004 1127 CDD PH_PLD 217 359 - -
Stsc598g00004 1127 CDD PLDc_vPLD1_2_yPLD_like_1 389 534 - -
Stsc598g00004 1127 CDD PLDc_vPLD1_2_yPLD_like_2 784 968 - -
Stsc598g00004 1127 Gene3D - 261 361 IPR011993 -
Stsc598g00004 1127 Pfam PLD-like domain 921 971 IPR025202 -
Stsc598g00004 1127 SUPERFAMILY Phospholipase D/nuclease 765 1001 - -
Stsc598g00004 1127 Gene3D Endonuclease Chain A 729 984 - -
Stsc598g00004 1127 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc598g00004 Stsc-Chr598 3308 13588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc598g00004 1 1008 Phospholipase D Gene Family (Wang group) AT3G16785 72.288 0.0 1394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc598g00004 K01115 - gmx:100780514 1966.04