Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc596g00001 ATGGAGGAATTCTCTTTTGGAAACCCTAATTATTCTAACCCTAATTACTCTCATTCTTCCATGAATATGGCTTCTCCCACCTCAGATTTCATGTTATCTGATTATCTACTGCTTGATGATGATGTTATTATTGATCATCATCATTATCAAGATTCTTTGTCACAGAGTACTGAATCATTGGAGTTTGCAGCAGCATCAAGCGATGTCAATCACGGATTTGGTGGTGTAACCACCTCCAACAACAATAACAGCATGCAAGTGATAGAGGCTGAAATAATTAATCTTTCTCTTTTTGTTCAAACAATGCTTAAAATTGTTATTTTATGTATAATAGTAGTCTTTTTGGATTTTGTTGACAGAAAATGCAAAAATAATGTGAGTAAGCGAAAGAAGCAGGTAGCAGCAGCAGGCCAAAGGGTGGTGTTCAGAACAAGATCGGAGATAGAGGTCATGGATGATGGATATAAATGGAGAAAGTATGGAAAGAAGACAGTAAAGAACAGTCCCAATCCTAGGAACTATTACAAGTGCTCGAGTGTAGGATGTGGTGTGAAAAAAAGGGTGGAAAGAGATGCAGAAGACATGAGCTATGTGTTAACAAGTTATGACGGCATCCACAATCACCAAATCCGCTCTTCTAATAACTTCTACCACAATAATAATAATACTTCTCCATACTCCTTCTTTCACACTGTTCCTGCAAACTCATCATCCTCCAATTCCTAG 726 0.3747 MEEFSFGNPNYSNPNYSHSSMNMASPTSDFMLSDYLLLDDDVIIDHHHYQDSLSQSTESLEFAAASSDVNHGFGGVTTSNNNNSMQVIEAEIINLSLFVQTMLKIVILCIIVVFLDFVDRKCKNNVSKRKKQVAAAGQRVVFRTRSEIEVMDDGYKWRKYGKKTVKNSPNPRNYYKCSSVGCGVKKRVERDAEDMSYVLTSYDGIHNHQIRSSNNFYHNNNNTSPYSFFHTVPANSSSSNS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc596g00001 241 SMART WRKY_cls 151 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc596g00001 241 Pfam WRKY DNA -binding domain 152 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc596g00001 241 SUPERFAMILY WRKY DNA-binding domain 143 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc596g00001 241 FunFam WRKY transcription factor 57 137 211 - -
Stsc596g00001 241 Gene3D WRKY domain 138 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc596g00001 241 ProSiteProfiles WRKY domain profile. 146 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc596g00001 241 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 51 222 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc596g00001 Stsc-Chr596 5327 7447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc596g00001 120 219 WRKY Transcription Factor Family AT5G64810 61.000 1.16e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc596g00001 WRKY 9e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc596g00001 - - gmx:100127396 170.629