Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc593g00006 ATGGAGTCCACCCACTTCTTCATTATCTCCATTGCTATTTCCCTCAGCTTCTGCTTCATCATTCAAACCCATGCCTTAGCTTCTTCGAACTCTAACAATCCATTCCCCAAAGAAGCTCACCCCACCAAAACTGGTTACCTCCCTGTGAATACCACTTCTTCATCTGCAATCTTCTATGCTTTCTATGAAGCTCAGAACTCCACCTTACCTCTCTCGCAAACTCCACTTCTCATTTGGCTCCAAGGTGGCCCTGGCACCTCCTCCATGTTCGGCAACCTCTATGAGGTTGGACCATGGACTTTTTCTGACAAGTCCTTCACTTTTCGACCCAACTCCGGTGCATGGAACAGACTCTTTGGCCTTCTTTTTCTCGATAACCCCATTGGTACTGGATTTAGTGTTGCCTCATCAATCAACGAAATCCCAACGGATGAAAAAGGTGTTGCCAAACACCTCTTTGCTGCTATAACAACGTTTCTTAAGCTTCACCCTGAATTCAAACATCGCCCCATTTACATTACTGGAGAAAGCTATGGTGGCAAGTATGTCGTCTCAATTGGGTACTACATATTGAAGGAGAATGCAAGGTTGAGTGATTCTGAAAGAGTGAATTTGGTTGGTGTTACCATTGGTGATGGCTCAACAGATCCAGAGATACAAACAGCTACTCATGCTACCACTGCTTATCATGCTGGTTTAATCAATGATAAGCAGAAGGAGGAGTTGGAGAAGAATCAGATGGAAGCAGTTACTTTGACACAGAATTTGAAATGGAGTGAAGCAACAGATGCACAGACCAAAGTGTTGACGAGGCTGCAAAAAATGGCAGGGTTGGCTACTTTCTATGATTACACAAGGAAAGATCATCCTTATCATTTCAAAGATTGGATGACTGAGTTGTTGAACATGGCTGAGGTGAAGAAGACACTGGGAGTGAACGAATCTCTTGTGTGGGCGTTACATAACAGTGATGTTAAAGCTGCATTGTATGCAGATATGATGAAGAGTGTGAAGTTCATGGTGGAAGAGTTGTTGAGGAGCAACAGTGTTAGGGTGTTGTTGTACCAAGGTCAATGGGATTTGCTTGATGGTCCAGTGCAAGTTGAGGCATGGGTGAAGACCATGGAATGGGAAGGGATTGTGGAGTATATGAATGCAGAGAGGAAGATATGGAAGGTGAATGGAGAGCTTGCTGGTTATGTCCAACAATGGAAGTCACTCACCAATGTTGTTGTGCTGGATGGTGGCCATTATGTTCCTGCAGACCAGCCTCTCAATGCTCAAGCAATGATTGAAGACTGGGTCTTGCAAAGGGGTATTTTTGGAAATTTATCTTACGTTGCTTACATGTGA 1353 0.4405 MESTHFFIISIAISLSFCFIIQTHALASSNSNNPFPKEAHPTKTGYLPVNTTSSSAIFYAFYEAQNSTLPLSQTPLLIWLQGGPGTSSMFGNLYEVGPWTFSDKSFTFRPNSGAWNRLFGLLFLDNPIGTGFSVASSINEIPTDEKGVAKHLFAAITTFLKLHPEFKHRPIYITGESYGGKYVVSIGYYILKENARLSDSERVNLVGVTIGDGSTDPEIQTATHATTAYHAGLINDKQKEELEKNQMEAVTLTQNLKWSEATDAQTKVLTRLQKMAGLATFYDYTRKDHPYHFKDWMTELLNMAEVKKTLGVNESLVWALHNSDVKAALYADMMKSVKFMVEELLRSNSVRVLLYQGQWDLLDGPVQVEAWVKTMEWEGIVEYMNAERKIWKVNGELAGYVQQWKSLTNVVVLDGGHYVPADQPLNAQAMIEDWVLQRGIFGNLSYVAYM 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc593g00006 450 ProSitePatterns Serine carboxypeptidases, histidine active site. 407 424 IPR033124 GO:0004185
Stsc593g00006 450 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 42 424 IPR001563 GO:0004185|GO:0006508
Stsc593g00006 450 Pfam Serine carboxypeptidase 41 435 IPR001563 GO:0004185|GO:0006508
Stsc593g00006 450 SUPERFAMILY alpha/beta-Hydrolases 41 436 IPR029058 -
Stsc593g00006 450 PRINTS Carboxypeptidase C serine protease (S10) family signature 407 420 IPR001563 GO:0004185|GO:0006508
Stsc593g00006 450 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Stsc593g00006 450 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Stsc593g00006 450 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 184 IPR001563 GO:0004185|GO:0006508
Stsc593g00006 450 Gene3D alpha/beta hydrolase 19 441 IPR029058 -
Stsc593g00006 450 ProSitePatterns Serine carboxypeptidases, serine active site. 173 180 IPR018202 GO:0004185
Stsc593g00006 450 Coils Coil 235 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc593g00006 Stsc-Chr593 30755 32271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc593g00006 302 435 Calmodulin-binding Proteins AT2G22960 20.588 1.00e-05 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc593g00006 K09645 - gmx:100780822 583.178