Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc58g00011 ATGGGAACACTGGAGAGGAGTCCTTTGGTAAGAATGGAGGTTCCAGTCTCCAAACAAGAACAGCCAAGTAAGCTTATTGGTGGCAACAGTCCACACTCAACCTCAAAATGCTCTAGAACTTTTGGCCTTTCGAAGAAAAGAAAGGCTCAAGAAAATCACAAGCATGATGTCACAGAACCAAAGTCAGAAGGGAAAGAAGAATTTCTGATCAGTTCAAACAGGACTATCAAAAAGGTGAATGAACAAAAAAAACTCAAAAAATCAAATAAGAATGACCAATACAAAGATGATCCATTAATTGACGATTTGGATGATGATGAGGAAATGTTTTTCCTTCTAAAGACAAAGTACACAAGAAGGGCTAGGAGAATGGATGATAATGTTACGGTTGTTGAACAAAATCCCCACAAATGTCATCAATGCATGAAGAAGGAGCGAACAACTTTTGTGCCTTGTGCTAAATGTCAGAAAATGTACTGTCTGCGGTGCATCAACCAATGGTACCCTGATATGTCAGTAGAAGAAATTGCTGAAAGTTGCCCATGTTGCCGTAATAATTGCAATTGCAATGTTTGTTTGTGTTCAAGAGGAACAATTAAGACATCTACGAAGGATATAACTGATACTGAAAAGGTTCAACATCTACAATATATGGTTAACTTACTCATTCCATTTCTGAGAGAAATTCGTCATGAACAGAGTCAAGAGGAAGATATTGAAGCTAAAATACAAGGTTGTCATGTTGAGATACCGCAGAGTCTTTGTGGCGACAATGAACGTGTATATTGTGATCATTGTGCCACTTCAATTGTTGACCTCCATCGAAGCTGCCCGAATTGTTCCTTCGAACTTTGTCTAAATTGTTGCCAAGAAATTCGCAATGCAAGCATTACATCACGGGCTGAGCTAAAGTTCCAGTATTTGAATAAAGGTTATGATTACATGCACGGTGGTGATCCTCTTCCAGTATCCCCTATTCTAGAAGCCTCAAATGGTCATGTTCAATTATCTTCCCTGTGGAATGCTGATAGTTATGGAAGGATCAATTGTGCACCAAAGGAGGTTGGGGGTTGTGGTAGTTCCATATTAGAGCTGAGGTGTATTCTACCACATGGATGGCTATCTAAACTGGAAGCTAAAGCACAAGAGATGCTGAGATTTTGTGAAATAAAACTAAAAACAGTTCTTCCAAAAGAAGCAGCATCAAGCTCTAACTTAATGAGAAGGGCAGCATTCCGAGAAGGAACAAGTGGCAATAACATATACTCTCCAGAGTCCGGAGACATCTCAAAGGAAAGCTTCCTGTTATTTCAAAAGCATTGGTCTAATGGTGAACCGGTTATAGTTCGTGATGTTTTAAAACAGGGAACTGGTCTGAGCTGGGAGCCAATGGTCATGTGGCGAGTTTTATGCGAAAGTTCAGTTTCAGAAATTAGCTCAAAAATGTCAGAAGTGAAGGCCATGGATTGTCTAGCTGGTTGTGAGGTAGAAATTAATACTCATAAGTTCTTTAAAGGTTATACTGGAGGGAGAACATATAGAAATCTCTGGCCAGAGATGCTGAAGCTAAAAGATTGGCCTCCCTCAGACAAGTTTGAAGATCTTCTTCCCCGCCATTGTGATGAGTTTATACGTTGCTTGCCATTTCAAGAGTATAGTGATCCCCGTGCTGGAATTGTCAATCTTGCTGTGAAATTGCCAGCCCATGTCCTAAAGCCTGACATGGGTCCAAAAACTTATATAGCTTATGGAATTAAAGAAGAACTTGGTAGAGGAGACTCTGTGACAAAGCTTCATTGTGATATGTCAGACGCGGTTAATATTTTGACACATACAGCTGAGGTTACACTAAGTGATGAACAATATTCTGTCATTTCCAAGCTGAAAGAAGCACATGCAGCACAAGATAAGGAAGAACTCTGGTCAGAAGAGAGAAATTCTGAGTACCTGAGTGTTCAACCTTGCAAAGATGAGAGAGAACAGATAGAACACAAGGACGCATTAAACCCCAAAGATATCAAGAAGTGCAATGGGATGGTCTATCTGCATGAGAAGTTTGAGGGGGCTGATTCCCCTGCCATCTCTAATGAAAATGAAACCGGAGAAACAAGTGGCGCTCTATGGGATATCTTTCGTAGAGAGGATGTTGAAAAGTTAGAAACATATCTGATTAAACATTCAAAAGAATTTAGACACACTTATTGCTCTCCGGTTGAACATGTTGTCCATCCGATTCATGATCAATGCTTTTATTTGAATATGGAGCACAAAAGGAAGTTGAAGGAGGAGTTTGGTGTAGAGCCATGGACATTTGAGCAGAAACTTGGCGAGGCGGTGTTTATTCCTGCTGGATGCCCGCACCAAGTGAGAAATCTCAAGTCATGTACAAAAGTTGCTGCAGACTTTGTCTCCCCGGAAAATATCAGTGAGTGTCTGCGTTTGACTAATGAGTTTCGGAAGCTTCCGAAGAACCACAAGGCCCGAGAAGATAAATTGGAGATAAAGAAAATGATAGTGTATGCACTTGATCAAGCTCTCAAAGACCTGAAAGCTTTGATCAATTGTTCTTGA 2571 0.4037 MGTLERSPLVRMEVPVSKQEQPSKLIGGNSPHSTSKCSRTFGLSKKRKAQENHKHDVTEPKSEGKEEFLISSNRTIKKVNEQKKLKKSNKNDQYKDDPLIDDLDDDEEMFFLLKTKYTRRARRMDDNVTVVEQNPHKCHQCMKKERTTFVPCAKCQKMYCLRCINQWYPDMSVEEIAESCPCCRNNCNCNVCLCSRGTIKTSTKDITDTEKVQHLQYMVNLLIPFLREIRHEQSQEEDIEAKIQGCHVEIPQSLCGDNERVYCDHCATSIVDLHRSCPNCSFELCLNCCQEIRNASITSRAELKFQYLNKGYDYMHGGDPLPVSPILEASNGHVQLSSLWNADSYGRINCAPKEVGGCGSSILELRCILPHGWLSKLEAKAQEMLRFCEIKLKTVLPKEAASSSNLMRRAAFREGTSGNNIYSPESGDISKESFLLFQKHWSNGEPVIVRDVLKQGTGLSWEPMVMWRVLCESSVSEISSKMSEVKAMDCLAGCEVEINTHKFFKGYTGGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRCLPFQEYSDPRAGIVNLAVKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVTLSDEQYSVISKLKEAHAAQDKEELWSEERNSEYLSVQPCKDEREQIEHKDALNPKDIKKCNGMVYLHEKFEGADSPAISNENETGETSGALWDIFRREDVEKLETYLIKHSKEFRHTYCSPVEHVVHPIHDQCFYLNMEHKRKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAADFVSPENISECLRLTNEFRKLPKNHKAREDKLEIKKMIVYALDQALKDLKALINCS 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc58g00011 856 MobiDBLite consensus disorder prediction 22 40 - -
Stsc58g00011 856 Pfam JmjC domain, hydroxylase 699 802 IPR003347 -
Stsc58g00011 856 SUPERFAMILY Clavaminate synthase-like 433 846 - -
Stsc58g00011 856 MobiDBLite consensus disorder prediction 44 66 - -
Stsc58g00011 856 Gene3D Cupin 426 828 - -
Stsc58g00011 856 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 44 852 IPR045109 GO:0032454|GO:0033169
Stsc58g00011 856 ProSiteProfiles Zinc finger RING-type profile. 138 184 IPR001841 -
Stsc58g00011 856 ProSiteProfiles JmjC domain profile. 555 819 IPR003347 -
Stsc58g00011 856 SMART cupin_9 536 819 IPR003347 -
Stsc58g00011 856 MobiDBLite consensus disorder prediction 1 66 - -
Stsc58g00011 856 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 134 203 IPR018866 -
Stsc58g00011 856 CDD cupin_RmlC-like 736 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc58g00011 Stsc-Chr58 23570 28507 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc58g00011 JmjC 1.5e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc58g00011 K15601 K21989 gmx:100797860 1158.28