Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc588g00006 ATGACAATGGTGGAAGAAGCGGTGGCTATAGAGGACGAAATCAAATCGGTCATGGCTCCTCCGCACAACTTCTCGGTGGTTGAGGACGGCGTTTACCGCTCCAGCTTCCCGAAACCTTCTAATTTTGCTTTCCTTCAAACCCTAAATCTTCGAGCAATCATATGCTTATGCCCTGAACCGTATCCTGAGGAGAATCTTGAATTTCTTCAATCTCATAATATTCGTCTCTTTCAGTTTGGTATTGAGGGCAAGACGGATCTTTCTCAGTCCATTGTCAAAAATACAATCACGGAGGCTCTCAAAGTTTTAATTGATGTGAGAAATCACCCAGTTTTGATCCATTGCAATAGTGGAAAGCATAGAACTGGTTGCCTAGTTGGATGCATGAGGAAATTACAGAATTGGTGTTTGGATTCAGTGTTTGAAGAGTACAAGAAATTTGCCGGTGCCAAATCAAGAAACACAGATTTGAAATTCATAGAAACCTTTGACATCTCAAGCATGAGACAATGTCTTTACAGCATCATATACCAATACCAAGGATTTTCTTCAAACAAGAAGCCTCGCTTGTTGTTTAGATCCGATGACAACAACGTACAGAAACCACAATTGACAAAAGTTTAA 624 0.4054 MTMVEEAVAIEDEIKSVMAPPHNFSVVEDGVYRSSFPKPSNFAFLQTLNLRAIICLCPEPYPEENLEFLQSHNIRLFQFGIEGKTDLSQSIVKNTITEALKVLIDVRNHPVLIHCNSGKHRTGCLVGCMRKLQNWCLDSVFEEYKKFAGAKSRNTDLKFIETFDISSMRQCLYSIIYQYQGFSSNKKPRLLFRSDDNNVQKPQLTKV 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc588g00006 207 ProSiteProfiles Dual specificity protein phosphatase domain profile. 23 172 IPR020422 GO:0006470|GO:0008138
Stsc588g00006 207 Pfam Tyrosine phosphatase family 20 168 IPR004861 -
Stsc588g00006 207 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 19 163 IPR029021 -
Stsc588g00006 207 FunFam probable tyrosine-protein phosphatase At1g05000 17 167 - -
Stsc588g00006 207 CDD PFA-DSP_Siw14 20 164 - -
Stsc588g00006 207 PANTHER TYROSINE-PROTEIN PHOSPHATASE 17 177 - -
Stsc588g00006 207 Gene3D Protein tyrosine phosphatase superfamily 17 167 IPR029021 -
Stsc588g00006 207 ProSitePatterns Tyrosine specific protein phosphatases active site. 113 123 IPR016130 GO:0016311|GO:0016791
Stsc588g00006 207 PRINTS Plant and fungal dual specificity phosphatase signature 55 68 IPR020428 GO:0016791
Stsc588g00006 207 PRINTS Plant and fungal dual specificity phosphatase signature 91 105 IPR020428 GO:0016791
Stsc588g00006 207 PRINTS Plant and fungal dual specificity phosphatase signature 18 35 IPR020428 GO:0016791
Stsc588g00006 207 PRINTS Plant and fungal dual specificity phosphatase signature 74 88 IPR020428 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc588g00006 Stsc-Chr588 23720 25258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc588g00006 11 207 Protein tyrosine phosphatase (PTP) family AT3G02800 62.437 1.65e-94 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc588g00006 K18045 - jre:108982966 304.679