Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc582g00002 ATGTATTGTGATGGTTGCAATTGTACAAATTGTCAAAACAATGTGGATAATGAGGCAGCTAGAAAGGAGGCTGTTGGACTAACATTAGAACGCAATCCAAATGCTTTCAGACCAAAAATTGCTAGCAGTCCGCAAGAAACTCGTGATTCCAAGGAAGATGTGTCTGAAATTCAAGTAGTTGGAAAGCACAATAAAGGATGTCACTGTAAAAAATCAGGTTGCCTTAAGAAGTATTGCGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGCAAATGTATGGACTGCAAGAATTTTGAAGGAAATAATGAAAGAAGAGCAATTTTGCATGAAGAGTGTAATATGTTTCGCATCAAACAGGAAGCAAATGCTGCCATCAGTGGAGGAGTTGTTTCCTCTGGCTATGGGACTGGAACTGGCATAACACCCAAGAAAAGAAAAATTCAGGAAATATTTTCTGGCAAATCATCAATAGAAAAAACTGTTTTCCGAACAACTCGATATCAACAGGAAACCGATCCTATAGTTACACCACCTAAATCTCAGTCAACTTCCTTTTCTGCTGACACTGCCAACACTAGAAATTCAGTTTATTCAAGATCTAGTTACAGATCACCATTGGCGGATGTCCTCCAGCCACAAAATGTGAAGAATCTCTGTTCACTTTTTGTTGTTCTCTCAGGAGTAGCTGTCAAGACAAATGCAGAAATGAAAGGCAAAGTAGGCCAGAACATCGAGGCTGGGAAATTTGAAGCTTCTATTCCTTCATCAGTTCATTTTCTGCAAGACAGTGAAGATGTCCACAACTTTGTATGTGATAATCGTAAAGATGAAGTAGGCGGAGTTGATATTGAGTGTTACAATAGGCCACTGTCACCAGAAACACTATCACTGATGTGTGATGAACAAGATGAGGCGTTTTTCAATAATGGTTCTGCAAACAGAGTGGCATGCAACAATTCTCAAAGCATTGTTCAAAAGCCATCTTCTTCTGATGAATACCCTGATGTGTATGGGGAGAAAGAAAGGGTTGTCCTCACGAAGTTCTGGGATGTTCTACGCGGACTCATTACTGTTGGAAGCATAAAAGAAACAATGTGTTCTTCGTTAGCCAAGAAAGACGAGGGAAGCAAGGAAGAACCTGCAACCAACGGCAACAGTAATGGTGCTGAAACTGATATAAGGAGTGAAAAGAAGGAAACTCCTAGCAACTGTGTTGCAAAGTGCCCCATGCCATCACCGGCCATTGAAATATCTCAGAAAAAGCTTGCAATGATCAATGGCAATGGTGATATTGATCTCTCATTAAGGGTTACTTGCCAATTTGATGGAAGGAGATGA 1344 0.404 MYCDGCNCTNCQNNVDNEAARKEAVGLTLERNPNAFRPKIASSPQETRDSKEDVSEIQVVGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGNNERRAILHEECNMFRIKQEANAAISGGVVSSGYGTGTGITPKKRKIQEIFSGKSSIEKTVFRTTRYQQETDPIVTPPKSQSTSFSADTANTRNSVYSRSSYRSPLADVLQPQNVKNLCSLFVVLSGVAVKTNAEMKGKVGQNIEAGKFEASIPSSVHFLQDSEDVHNFVCDNRKDEVGGVDIECYNRPLSPETLSLMCDEQDEAFFNNGSANRVACNNSQSIVQKPSSSDEYPDVYGEKERVVLTKFWDVLRGLITVGSIKETMCSSLAKKDEGSKEEPATNGNSNGAETDIRSEKKETPSNCVAKCPMPSPAIEISQKKLAMINGNGDIDLSLRVTCQFDGRR 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc582g00002 447 ProSiteProfiles CRC domain profile. 1 102 IPR005172 -
Stsc582g00002 447 SMART CXC_2 62 103 IPR033467 -
Stsc582g00002 447 PANTHER TESMIN/TSO1-RELATED 2 358 IPR028307 -
Stsc582g00002 447 MobiDBLite consensus disorder prediction 35 54 - -
Stsc582g00002 447 MobiDBLite consensus disorder prediction 371 411 - -
Stsc582g00002 447 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 65 99 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc582g00002 Stsc-Chr582 6853 9845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc582g00002 2 373 CPP Transcription Factor Family AT4G29000 47.342 1.43e-102 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Stsc582g00002 TCR 2.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc582g00002 - K21776 gmx:100811459 548.51