Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc57g00020 ATGGACATTGATGGGCATGGCGATGGTGAGGAGAACTTGGGAGCTGCTGCAGAATTACAAAACAATTCCAAGAATCTTGACTCTGAGAAAACCAAAGGAAAATGCAAACTTTATGTAGGATCCCAGTCCTTGGGGTACCGCAGAGACTATATGGAGGTGCTGTCACCACTGAAGAATGGAGTTGTTGTTGACTGGAATATTGTAGACAACATATGGGATCATGCTTTGAGGGATTGTCTATTGGTTGATCCTAAAGAGCGTCCAATGCTACTTTCTGAGCCATGTAATAATACTCAAGAACAGAGAGAAAGGACAGCAGAGCTGATGTTCGAAAAATACAAAGTACCTGCATTGTTTTTGGCCAAGAATGCTGTCCTCACATCCTTCGCATCAGGGCGTGCTACATCATTAGTAATTGATAGTGGTGGAGGATCAACAACAGTTGCCCCAGTGCTTGATGGTTATGTTCTTCAGAAGGCTGTGACAACTTCTCCTATTGGAGGAGAATTTTTGACAGATTGCTTGATGAAAAGTTTGGAAGGCAAAGGTATCACAATAAAACCGAGGTATGCATTCAAGAAAAAGGAAATACGACCAGGAAATATTCAGACTGTAAACCTTGATTTTCCTCATACAACTGAAAGCTACAAACTATACTCCCAGGTTCGTAGTTGTTCCAACATTTTTTTCCCCTATGTCATCTGTCCTTTAGCTGCTGATTGTTTATTGTGA 732 0.4139 MDIDGHGDGEENLGAAAELQNNSKNLDSEKTKGKCKLYVGSQSLGYRRDYMEVLSPLKNGVVVDWNIVDNIWDHALRDCLLVDPKERPMLLSEPCNNTQEQRERTAELMFEKYKVPALFLAKNAVLTSFASGRATSLVIDSGGGSTTVAPVLDGYVLQKAVTTSPIGGEFLTDCLMKSLEGKGITIKPRYAFKKKEIRPGNIQTVNLDFPHTTESYKLYSQVRSCSNIFFPYVICPLAADCLL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc57g00020 243 CDD NBD_sugar-kinase_HSP70_actin 55 161 - -
Stsc57g00020 243 SUPERFAMILY Actin-like ATPase domain 31 139 IPR043129 -
Stsc57g00020 243 Pfam Actin 29 222 IPR004000 -
Stsc57g00020 243 Gene3D - 15 139 - -
Stsc57g00020 243 PRINTS Actin signature 47 69 IPR004000 -
Stsc57g00020 243 PRINTS Actin signature 101 114 IPR004000 -
Stsc57g00020 243 PRINTS Actin signature 126 145 IPR004000 -
Stsc57g00020 243 PANTHER ACTIN 36 192 IPR004000 -
Stsc57g00020 243 Gene3D - 140 167 - -
Stsc57g00020 243 Gene3D Actin; Chain A, domain 4 168 193 - -
Stsc57g00020 243 SMART actin_3 7 242 IPR004000 -
Stsc57g00020 243 SUPERFAMILY Actin-like ATPase domain 132 218 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc57g00020 Stsc-Chr57 154488 158034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc57g00020 33 183 Cytoskeleton Gene Families AT5G09810 37.748 3.80e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc57g00020 K11340 - gmx:100819549 370.163