Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc57g00002 ATGAAGAAGAAAAATCAAAACGTTTCGGTTGTAGTTATCTTGGCTGCATTGTTGTTTGCAGGCACATTCTCTTCGGTGTGTGCCTCCAAGCCAATAAGTTTCACTGAACTCAGAGATGTGGAAACCATGTACTCCAAGCAGTCGCAACTGCTCACCTACAGGGATGAGTTTGGCGACAGAGGAGAGAATGTTACTGTAGACCCGTCTCTGGTGTTCGAGAACGACCGTATAAGGAACACCTATATCGCTTTGCAAGCATGGAAGCAAGCCATTCTCTCCGATCCGTTTAACTTCACAGCGAACTGGGTAGGATCTAACGTGTGCAGCTACCAAGGGGTTTATTGTGCCCCTGCACGGGACAACCCAAAGATCCGTACTGTTGCCGGCATTGATCTGAACCACGCGGACATTGCTGGCTACTTACCGGAAGAGCTTGGCCTCCTTGTAGATCTAGCTCTCTTCCACATTAACTCAAACAGGTTCTGTGGCACATTGCCGCACAGCTTCGAGAGGCTCAAGCTGTTGTTCGAACTGGATCTCAGTAACAACCGCTTCGCGGGCAAGTTCCCTAGTGTTGTTCTGAGGCTCCCAACGCTCAAGTTCTTGGATCTGAGGTTCAACGAGTTCGAAGGTGGGGTCCCAAGGGAGCTGTTTGACAAAGATCTTGACGCCATTTTCCTGAATCACAACAGGTTCGTCTTTGAAATTCCTGATAACTTGGGGAACTCGCCTGTTTCCGTTATTGTGCTGGCCAACAACAGGTTCCATGGTTGCATCCCTGCGAGCATTGGCAACATGTCAAACCTCAACGAGATCATTCTCATGAACAATGAGCTGAGGGCCTGCTTGCCTTCCGAGATTGGCTTGTTGAAGAACCTCACCGTGTTTGATGTCAGCTTCAACCAGCTGTTAGGACCGTTGCCCAACGCCATTGGAGGAGCTGTGAGCTTGGAGCAGTTGGACGTGGCACACAACTTGCTCTCCGGGAACATTCCGGCCAGTATATGCATGCTGCCAAATCTTGAGAACTTTACGTATTCTTATAACTTCTTCACAGGGGAGCCGCCGCCATGCTTGAGGCTGGGGTCGTTTGATGACCGGAGAAACTGCTTGCCGGGGAGGCCATTACAGAGGTCAGCGGCGCAATGTAGTGCGTTCTTGTCTAAGCCTGTGGACTGTAACTCGTTTGGTTGCAGGCCATTTGGTTCTTCCCCTTCGCATCCTTCTCCTTCTTCACCGCCATCTACTCCTTCACCTTCTCTGCCTTCTCCCTCTTCCCCTTCGCATCCTTCGCCACCTGGACCTGGACAAGGTCCTCCTTCATCTACTCCTACTCCCATACCTTCTCCACCTGGAAGTGAACCTTCCCCTATATATAGACCACCCTCCCCTCCCCCCACTTCACCATTGCCATCACCATCACCATCACCATCACCATCACCACCATCAACATCACCACCATCACCATCACCATCACCATCACCATCACCTTCACCTATAGTGGTTCCTTCACCACCATCCCCTGTTTACACTCCACATTCTCCTCCTCCTCCGCCACCACCCTTTTACTCTCCTCCATCTCCCCCGCCATCACCAGTCCATACACCACCTTCACCTAACCCAACTCCAACGCCAACATACTGTGTACGGTCGCCACCTCCTGCGCCGCCAAATTCTCCACCTCCACCTGCTCCTCAATTAACCCCGCCCCCACCTTCGCCTTATTATTACAACTCACCGCCACCTCCAACACACTCACCTCCGCCACCTCCCACATACTCACCTCCTCCACCCACATATTCCTACCAATCACCGCCACCTCCACCACCGGTACATTCGCCGCCTCCACCATCTCCGCCACCCTGCATAGAACCTCCTCCACCGGTCCACTATAGTTCTCCACCACCCCCTGTCCATTACAGTTCACCACCACCACCACCTAGCCCTGTTCATTATAGTTCTCCGCCGCCCCCAGCTTCACCACCACCATGCGAAGAAACTCCACCGCCTCCGCCGCTTACACCACCACCATGCGAAGAAACTCCGTCTCCAGCCCCTGTATATGAAGGGCCATTGCCACCTGTGATCGGAGTCCCATACTCATCGCCTCCACCACCACCTTTCTATTAA 2130 0.5268 MKKKNQNVSVVVILAALLFAGTFSSVCASKPISFTELRDVETMYSKQSQLLTYRDEFGDRGENVTVDPSLVFENDRIRNTYIALQAWKQAILSDPFNFTANWVGSNVCSYQGVYCAPARDNPKIRTVAGIDLNHADIAGYLPEELGLLVDLALFHINSNRFCGTLPHSFERLKLLFELDLSNNRFAGKFPSVVLRLPTLKFLDLRFNEFEGGVPRELFDKDLDAIFLNHNRFVFEIPDNLGNSPVSVIVLANNRFHGCIPASIGNMSNLNEIILMNNELRACLPSEIGLLKNLTVFDVSFNQLLGPLPNAIGGAVSLEQLDVAHNLLSGNIPASICMLPNLENFTYSYNFFTGEPPPCLRLGSFDDRRNCLPGRPLQRSAAQCSAFLSKPVDCNSFGCRPFGSSPSHPSPSSPPSTPSPSLPSPSSPSHPSPPGPGQGPPSSTPTPIPSPPGSEPSPIYRPPSPPPTSPLPSPSPSPSPSPPSTSPPSPSPSPSPSPSPIVVPSPPSPVYTPHSPPPPPPPFYSPPSPPPSPVHTPPSPNPTPTPTYCVRSPPPAPPNSPPPPAPQLTPPPPSPYYYNSPPPPTHSPPPPPTYSPPPPTYSYQSPPPPPPVHSPPPPSPPPCIEPPPPVHYSSPPPPVHYSSPPPPPSPVHYSSPPPPASPPPCEETPPPPPLTPPPCEETPSPAPVYEGPLPPVIGVPYSSPPPPPFY 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc57g00002 709 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 26 583 - -
Stsc57g00002 709 Pfam Leucine rich repeat N-terminal domain 83 115 IPR013210 -
Stsc57g00002 709 Gene3D Ribonuclease Inhibitor 244 385 IPR032675 -
Stsc57g00002 709 Gene3D Ribonuclease Inhibitor 81 243 IPR032675 -
Stsc57g00002 709 FunFam Leucine-rich repeat extensin-like protein 1 81 242 - -
Stsc57g00002 709 FunFam Leucine-rich repeat extensin-like protein 5 243 382 - -
Stsc57g00002 709 PRINTS Proline rich extensin signature 466 491 - -
Stsc57g00002 709 PRINTS Proline rich extensin signature 424 440 - -
Stsc57g00002 709 PRINTS Proline rich extensin signature 447 464 - -
Stsc57g00002 709 PRINTS Proline rich extensin signature 401 422 - -
Stsc57g00002 709 MobiDBLite consensus disorder prediction 406 709 - -
Stsc57g00002 709 MobiDBLite consensus disorder prediction 402 709 - -
Stsc57g00002 709 SUPERFAMILY L domain-like 81 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc57g00002 Stsc-Chr57 13156 15799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc57g00002 37 409 Leucine-rich Repeat extension Gene Families AT3G24480 76.471 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc57g00002 - - zju:107431856 638.647