Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc579g00004 ATGGGAGGTTGCTGTTGTTCTGCAAGAAAACCTCATCTGCATGGAACCCCAGTTTATTACTATTGCCCGCCAACTTTGGAGGAGCGTGAGTTGTTAACCTCTAATGATGCTACTGCTTCTTCACTCACTGCTGGATTGCTGATTGGCTTAAACCTGGATGCATCCACACCCGATACCTACCAGCCTCCACCTGCGCCTCTGCCTTATGATGTGGTCTTAGGAGGTTCTGCATCAACAGATTCCGAGTCTTTCAGAGAAACGGTTAGTGGTAGTAGTTTCGAGGCTTTAATTGCACGAGAAGATCTCGAAGAAGCAAATAGTAAAGCTCAAGCAAATTCTGCACCTATATCTCCAAAGAAGGCAGAGTTATCAAAATCAAATCAGACTCAAGTGCTACTTTCGGAAGAAGAAGATGTTTGTCCAATTTGTCTTGAAGAATATGATGTTGAGAATCCCAAAAATCTGACGAAATGCGAGCACCACTTTCACCTATCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGCCCGATATGTGATCAGGAGATGATATTTTGA 561 0.4367 MGGCCCSARKPHLHGTPVYYYCPPTLEERELLTSNDATASSLTAGLLIGLNLDASTPDTYQPPPAPLPYDVVLGGSASTDSESFRETVSGSSFEALIAREDLEEANSKAQANSAPISPKKAELSKSNQTQVLLSEEEDVCPICLEEYDVENPKNLTKCEHHFHLSCILEWMERSDSCPICDQEMIF 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc579g00004 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 185 IPR013083 -
Stsc579g00004 186 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 36 185 - -
Stsc579g00004 186 Pfam Ring finger domain 139 180 IPR001841 -
Stsc579g00004 186 SMART ring_2 140 180 IPR001841 -
Stsc579g00004 186 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
Stsc579g00004 186 CDD RING-H2_AIRP1-like 136 184 - -
Stsc579g00004 186 SUPERFAMILY RING/U-box 133 184 - -
Stsc579g00004 186 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc579g00004 Stsc-Chr579 23856 27386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc579g00004 1 186 C3H Transcription Factor Family AT4G00335 55.914 1.37e-73 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc579g00004 - - gmx:100792561 326.25