Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc579g00002 ATGGGCTTCCCCGTTGGCTACACCGAAGTCCTCGTCCCTAACATCTTCCTCCGCCTCCTCACCTTCCTCGCCGCCCTCCGAAACCTCGTACTCTCCCTCTTCCGCCTCCTCGGCATCTCCGAACTCCTAGACACCACCTCCACCGACACTTACCCTCTATCTTGGGCCCAGGCCCACCAGGCCCAATTCAACCGGCCCAACACCACCACTACAACCACCACAATCCCCATCCCTTCCCTCTCCGCTATCCTCATCCGCGAATTCCTCCCCGTCATGAAATTCAGCGACCTAGCCGGCGCCGGAGATTTCATCCCGGCGACGACGGAGAACGGATGCGCGGTTTGCCTGAGCGAATTCTCCGGGGAAGACGAGATCAGGTGTATGGCGAACTGCAGACACGTGTTCCATAGCGGTTGCGTGGACCGTTGGATGGACCATGATCAGAGAACTTGCCCTCTCTGTAGAACTCCTTTCGTCCCCGATCACAAAGTGAACGAGTACAATCAACGCCTCTGGGAAGCTTCCGGAGCAACTGAATTCTACGCGGATTAA 552 0.5761 MGFPVGYTEVLVPNIFLRLLTFLAALRNLVLSLFRLLGISELLDTTSTDTYPLSWAQAHQAQFNRPNTTTTTTTIPIPSLSAILIREFLPVMKFSDLAGAGDFIPATTENGCAVCLSEFSGEDEIRCMANCRHVFHSGCVDRWMDHDQRTCPLCRTPFVPDHKVNEYNQRLWEASGATEFYAD 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc579g00002 183 SMART ring_2 112 154 IPR001841 -
Stsc579g00002 183 Pfam Ring finger domain 112 155 IPR001841 -
Stsc579g00002 183 SUPERFAMILY RING/U-box 96 164 - -
Stsc579g00002 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 164 IPR013083 -
Stsc579g00002 183 ProSiteProfiles Zinc finger RING-type profile. 112 155 IPR001841 -
Stsc579g00002 183 PANTHER RING ZINC FINGER PROTEIN-RELATED 24 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc579g00002 Stsc-Chr579 9655 11000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc579g00002 1 178 C3H Transcription Factor Family AT1G63840 45.251 8.36e-49 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc579g00002 K16281 - gmx:100813224 200.29