Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc573g00006 ATGGTTTCAAGTAGCCGAATTTTCGGTGGCGGCCGCGGTTGTGCTGTTGTTCTAGCTGTTTGTTTATTGCTGCTTATTAGTTGTGGCAAGATACATGGAACTTCCAGTGATATCTTCTGCTTGAAGAGTGTTAAAGCTTCACTCCATGACCCCAATAACCATTTACAGTCATGGGATTTCAACAACAACACAGAAGGGTTTATCTGCAGGTTCACTGGGGTTGAATGTTGGCATCCTGATGAGAATAGAGTCTTGAATCTCAAGTTGTCAAACATGGGGATCAAAGGGTCGTTCCCTCGCGGCCTTTTGAATTGCTCGAGCTTAACCGGGTTAGATCTTTCGATTAACAAGCTTTCTCAGGCCATTCCAGAGGACATATCTACAATTATTCCGTGGGTGACAAAACTTGATCTGTCATCAAATGATTTTGAAGGGGAGATACCTGTTTTGCTTGCGAATTGTACCTTCCTTAATGATCTCAAACTTGACAAAAACAGGCTCACCGGTCAAATTCCCTCGCAATTAGGCCAGCTTCCAAGGCTTAAGACATTTAGTGTGTCCAATAATCTTCTGACCGGGCAAATTCCGGGGTTTCCGAAAGGGATAGTGACGGCTGACAGTTTTGCAAACAATCCAGGCCTGTGTGGCAGTCCTTTGAGTGCTTGCCAGAGTAACCTTTCCAACAGCAACACTGCAGTTATAGCCGGAGCAGCCGTTGGTGGTGTGACTTTTGCTGCATTGGTTGTGGGTGTTGCATTGTTCTTCTATGTCCGCCGTGTTTCTATCAGGAAGAAGGAAGAGGATCCTGAAGGAAACAAATGGGCAAAGAGTATAAAGGGTACTAAACAAATAAAGGTTTCCATGTTTGAGAAGACAGTTACAAAAATTAAATTGAGTGATCTCATGAAGGCTACAAATGACTTCAGTAAAAGCAACATTATTGGGTCAGGAAGAACAGGAACCATTTACAAAGCTGTTCTTGATGATGGCACATCACTCATGGTAAAGAGATTGCAACAATCTCAACACTCAGAGAAAGAATTTACATCTGAGATGGCCACGCTAGGGGCAGTGCAGCACCGGAACTTGGTTCCCCTCTTAGGTTTCTGTGTTGCCAAAAGGGAGAGGCTTGTAGTCTATAAAAATATGCCGAATGGCACCCTCCATGATCAGTTGCATAATCGAGCCGATGGGGGCACCATGGAGTGGTCCTTAAGGCTCAAAATTGCAATTGGAGCAGCCAAAGGATTAGCATGGCTTCATCACAGCTGCAATCCCCGAATCATACACCGAAACATAAGCTCTAAGTGCATCTTGTTGGATGCAGATTTCGAGCCAAAAATCTCCGATTTCGGCCTCGCTAGACTGATGAACCCCATTGACACACATTTAAGTACTTTTGTAAATGGTGAGTTTGGGGATTTGGGCTATGTTGCTCCTGAATACACAAAAACTTTGCTGGCCACACCTAAGGGTGATGTTTATAGCTTCGGTGTTGTGCTTCTTGAGTTGGTAACAAGCGAAAGACCTACTCACGTGGCGAAAGCCCCGGAAACTTTCAAAGGGAACTTGGTAGAATGGATTCAGGAGCTCTCAAGCAACTCCCAACTCCGTGATGCCATCGACGAATCCCTAACCGGGAAGGGCGCTGACGATGAACTTTTCCAATTCCTAAAGGTTGCATGCAACTGTGTTGTACCAACCTCGAAGGAGAGGCCAACTATGTTTGAAGTTTACCAGCTCCTAAGAGCCATTGGAAGTAAATATAACTTTACAACAGAGGATGAAATTTTGGTACCTGCTGATACTGGATATGCTGATAACTTAGAGGAGCTTATTGTAGCTCAAGAGGGAGGAAAGGATTGA 1866 0.4453 MVSSSRIFGGGRGCAVVLAVCLLLLISCGKIHGTSSDIFCLKSVKASLHDPNNHLQSWDFNNNTEGFICRFTGVECWHPDENRVLNLKLSNMGIKGSFPRGLLNCSSLTGLDLSINKLSQAIPEDISTIIPWVTKLDLSSNDFEGEIPVLLANCTFLNDLKLDKNRLTGQIPSQLGQLPRLKTFSVSNNLLTGQIPGFPKGIVTADSFANNPGLCGSPLSACQSNLSNSNTAVIAGAAVGGVTFAALVVGVALFFYVRRVSIRKKEEDPEGNKWAKSIKGTKQIKVSMFEKTVTKIKLSDLMKATNDFSKSNIIGSGRTGTIYKAVLDDGTSLMVKRLQQSQHSEKEFTSEMATLGAVQHRNLVPLLGFCVAKRERLVVYKNMPNGTLHDQLHNRADGGTMEWSLRLKIAIGAAKGLAWLHHSCNPRIIHRNISSKCILLDADFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTKTLLATPKGDVYSFGVVLLELVTSERPTHVAKAPETFKGNLVEWIQELSSNSQLRDAIDESLTGKGADDELFQFLKVACNCVVPTSKERPTMFEVYQLLRAIGSKYNFTTEDEILVPADTGYADNLEELIVAQEGGKD 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc573g00006 621 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Stsc573g00006 621 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 20 196 - -
Stsc573g00006 621 FunFam Leucine-rich repeat receptor-like protein kinase 383 593 - -
Stsc573g00006 621 ProSiteProfiles Protein kinase domain profile. 308 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc573g00006 621 FunFam Nuclear pore complex protein NUP107 34 197 - -
Stsc573g00006 621 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 269 382 - -
Stsc573g00006 621 Gene3D Transferase(Phosphotransferase) domain 1 383 600 - -
Stsc573g00006 621 Pfam Protein tyrosine and serine/threonine kinase 311 580 IPR001245 GO:0004672|GO:0006468
Stsc573g00006 621 Gene3D Ribonuclease Inhibitor 36 224 IPR032675 -
Stsc573g00006 621 CDD STKc_IRAK 314 582 - -
Stsc573g00006 621 Gene3D Phosphorylase Kinase; domain 1 269 381 - -
Stsc573g00006 621 SUPERFAMILY Protein kinase-like (PK-like) 285 582 IPR011009 -
Stsc573g00006 621 CDD TM_EGFR-like 227 265 - -
Stsc573g00006 621 SUPERFAMILY L domain-like 35 205 - -
Stsc573g00006 621 Pfam Leucine rich repeat N-terminal domain 36 77 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc573g00006 Stsc-Chr573 26058 28902 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc573g00006 17 596 Receptor kinase-like Gene Family AT3G28450 46.337 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Stsc573g00006 PK_Tyr_Ser-Thr 1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc573g00006 - - gmx:100801294 933.71