Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc573g00005 ATGGGGATCAAAGGGTCGTTCCCTCGCGGCCTTTTGAATTGCTCGAGCTTAACCGGGTTAGATCTTTCGATTAACAAGCTTTCTCAGGCCATTCCAGAGGACATATCTACAATTATTCCGTGGGTGACAAAACTTGATCTGTCATCAAATGATTTTGAAGGGGAGATACCTGTTTTGCTTGCGAATTGTACCTTCCTTAATGATCTCAAACTTGACAAAAACAGGCTCACCGGTCAAATTCCCTCGCAATTAGGCCAGCTTCCAAGGCTTAAGACATTTAGTGTGTCCAATAATCTTCTGACCGGGCAAATTCCGGGGTTTCCGAAAGGGATAGTGACGGCTGACAGTTTTGCAAACAATCCAGGCCTGTGTGGCAGTCCTTTGAGTGCTTGCCAGAGTAACCTTTCCAACAGCAACACTGCAGTTATAGCCGGAGCAGCCGTTGGTGGTGTGACTTTTGCTGCATTGGTTGTGGGTGTTGCATTGTTCTTCTATGTCCGCCGTGTTTCTATCAGGAAGAAGGAAGAGGATCCTGAAGGAAACAAATGGGCAAAGAGTATAAAGGGTACTAAACAAATAAAGGTTTCCATGTTTGAGAAGACAGTTACAAAAATTAAATTGAGTGATCTCATGAAGGCTACAAATGACTTCAGTAAAAGCAACATTATTGGGTCAGGAAGAACAGGAACCATTTACAAAGCTGTTCTTGATGATGGCACATCACTCATGGTAAAGAGATTGCAACAATCTCAACACTCAGAGAAAGAATTTACATCTGAGATGGCCACGCTAGGGGCAGTGCAGCACCGGAACTTGGTTCCCCTCTTAGGTTTCTGTGTTGCCAAAAGGGAGAGGCTTGTAGTCTATAAAAATATGCCGAATGGCACCCTCCATGATCAGTTGCATAATCGAGCCGATGGGGGCACCATGGAGTGGTCCTTAAGGCTCAAAATTGCAATTGGAGCAGCCAAAGGATTAGCATGGCTTCATCACAGCTGCAATCCCCGAATCATACACCGAAACATAAGCTCTAAGTGCATCTTGTTGGATGCAGATTTCGAGCCAAAAATCTCCGATTTCGGCCTCGCTAGACTGATGAACCCCATTGACACACATTTAAGTACTTTTGTAAATGGTGAGTTTGGGGATTTGGGCTATGTTGCTCCTGAATACACAAAAACTTTGCTGGCCACACCTAAGGGTGATGTTTATAGCTTCGGTGTTGTGCTTCTTGAGTTGGTAACAAGCGAAAGACCTACTCACGTGGCGAAAGCCCCGGAAACTTTCAAAGGGAACTTGGTAGAATGGATTCAGGAGCTCTCAAGCAACTCCCAACTCCGTGATGCCATCGACGAATCCCTAACCGGGAAGGGCGCTGACGATGAACTTTTCCAATTCCTAAAGGTTGCATGCAACTGTGTTGTACCAACCTCGAAGGAGAGGCCAACTATGTTTGAAGTTTACCAGCTCCTAAGAGCCATTGGAAGTAAATATAACTTTACAACAGAGGATGAAATTTTGGTACCTGCTGATACTGGATATGCTGATAACTTAGAGGAGCTTATTGTAGCTCAAGAGGGAGGAAAGGATTGA 1593 0.4482 MGIKGSFPRGLLNCSSLTGLDLSINKLSQAIPEDISTIIPWVTKLDLSSNDFEGEIPVLLANCTFLNDLKLDKNRLTGQIPSQLGQLPRLKTFSVSNNLLTGQIPGFPKGIVTADSFANNPGLCGSPLSACQSNLSNSNTAVIAGAAVGGVTFAALVVGVALFFYVRRVSIRKKEEDPEGNKWAKSIKGTKQIKVSMFEKTVTKIKLSDLMKATNDFSKSNIIGSGRTGTIYKAVLDDGTSLMVKRLQQSQHSEKEFTSEMATLGAVQHRNLVPLLGFCVAKRERLVVYKNMPNGTLHDQLHNRADGGTMEWSLRLKIAIGAAKGLAWLHHSCNPRIIHRNISSKCILLDADFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTKTLLATPKGDVYSFGVVLLELVTSERPTHVAKAPETFKGNLVEWIQELSSNSQLRDAIDESLTGKGADDELFQFLKVACNCVVPTSKERPTMFEVYQLLRAIGSKYNFTTEDEILVPADTGYADNLEELIVAQEGGKD 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc573g00005 530 FunFam Leucine-rich repeat receptor-like protein kinase 292 502 - -
Stsc573g00005 530 SUPERFAMILY Protein kinase-like (PK-like) 194 491 IPR011009 -
Stsc573g00005 530 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 8 131 - -
Stsc573g00005 530 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 105 - -
Stsc573g00005 530 Gene3D Ribonuclease Inhibitor 2 139 IPR032675 -
Stsc573g00005 530 Gene3D Transferase(Phosphotransferase) domain 1 292 510 - -
Stsc573g00005 530 ProSiteProfiles Protein kinase domain profile. 217 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc573g00005 530 SUPERFAMILY L domain-like 2 114 - -
Stsc573g00005 530 CDD STKc_IRAK 223 491 - -
Stsc573g00005 530 CDD TM_EGFR-like 136 174 - -
Stsc573g00005 530 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 178 291 - -
Stsc573g00005 530 Gene3D Phosphorylase Kinase; domain 1 178 290 - -
Stsc573g00005 530 Pfam Protein tyrosine and serine/threonine kinase 220 489 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc573g00005 Stsc-Chr573 26058 28902 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc573g00005 1 505 Receptor kinase-like Gene Family AT3G28450 46.471 1.03e-156 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Stsc573g00005 PK_Tyr_Ser-Thr 6.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc573g00005 - - gmx:100801294 824.313