Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc573g00003 ATGGAGAATCAATTCAAGAGTTGGATTTCTCAACATTTGGGAATGGAAGAAGAAGAACAAGAACAAGAACAAGAAGATGGTATTATCATCAATCAAAGCCATATGATGAACAACTCTTTGAATGAAGAGCAAGAGTTCCTAATGGAAATCTTTAATAATGGTCAACAAGAAAGTAGTGAACATTATTATTATTATTCTTCCTCTAATAATAATGATAATAATGTTCCTAATAATTGTGACATAATAAGCCCCAACAACAATAATAATAATGGTGTATCATTTGAAGATACAACACTGAAAAAAAGTAAGAGCTACAATTATATGATGTCTTTAGAGAAAAGTTGTTCTAGTTCTACTACTACTTGTTCAAGCTATGTGTTATCATTTGAGCCTAATTCGTCATCAAAGGAAAGAAGAACAAGTGATGATGATGGTGGTGGGTTTGAAGATGCAACAACTACTAAAAAGCGCAAAGCTAAGACACTAGATCATATAATGGCTGAGAGGAAAAGGAGGCAAGATCTAACAAGAAGCATCATCCAACTTTCAGCCACCATACCTGGCTTGAAGAAGATGGATAAGGCCTACGTAATTAGCGAAGCTCTTAATTACATAAAAGTACTTAAAGATCGAATTGAAGAGTTGGAGAGCCAAATCAAATACAGAAAAGTAGATTCAACAATATTAATAAAAAGATCTCAAGATTCATCAACAGAGAAAAGCAGTATCATCAGCTGTGAAACAACATCAGATAATAATGAATCATCACTTGAGATTGAAGCAAAAGTCTTGCAAAAAGAAGTGCTCATTAGAATCCAATGTGAGAAGCCAAAAAACAACATACTGCTCAAAATACATGCCTTGCTTGACAAGCTTCATCTCTCTATAGCAAGTAATAGTGTGTTACCATTTGGGGCTTCTACTACTGTGATAATTACCATTGTTGCTCAGATGGATGATGGTGACAAATTCAGCATGACAATGGATGAACTGGTGAAAAGCCTCAGAGAAGATTTGATGGAGACAAACAATTATGCATACTAG 1044 0.3429 MENQFKSWISQHLGMEEEEQEQEQEDGIIINQSHMMNNSLNEEQEFLMEIFNNGQQESSEHYYYYSSSNNNDNNVPNNCDIISPNNNNNNGVSFEDTTLKKSKSYNYMMSLEKSCSSSTTTCSSYVLSFEPNSSSKERRTSDDDGGGFEDATTTKKRKAKTLDHIMAERKRRQDLTRSIIQLSATIPGLKKMDKAYVISEALNYIKVLKDRIEELESQIKYRKVDSTILIKRSQDSSTEKSSIISCETTSDNNESSLEIEAKVLQKEVLIRIQCEKPKNNILLKIHALLDKLHLSIASNSVLPFGASTTVIITIVAQMDDGDKFSMTMDELVKSLREDLMETNNYAY 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc573g00003 347 PANTHER BHLH TRANSCRIPTION FACTOR 19 341 - -
Stsc573g00003 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 227 IPR036638 GO:0046983
Stsc573g00003 347 Coils Coil 198 218 - -
Stsc573g00003 347 Gene3D - 149 223 IPR036638 GO:0046983
Stsc573g00003 347 Pfam Helix-loop-helix DNA-binding domain 164 208 IPR011598 GO:0046983
Stsc573g00003 347 SMART finulus 165 214 IPR011598 GO:0046983
Stsc573g00003 347 MobiDBLite consensus disorder prediction 135 155 - -
Stsc573g00003 347 MobiDBLite consensus disorder prediction 129 155 - -
Stsc573g00003 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Stsc573g00003 347 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc573g00003 Stsc-Chr573 18380 20722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc573g00003 21 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 33.929 2.46e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc573g00003 HLH 3.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc573g00003 - - aip:107638103 377.096