Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc56g00021 ATGTCAGGTGCTGCCGGGGCGGTTGCTTTACACACTTCAATGTGTAGCTTCTCATCTTCCCATACCCATCGACCATCATCAACTCCTTTCAATTCTCACCAACCTAACACAAACATCCATCTCACTAGCCTCCTCCAGACTCACCCACTCTATCCTCTAACCAATGCAAGGCTCTCCCTTCAATTCAAGGAGAAAATCCTCTGCCTTGAGATCATGGGCGTTGATGCTGGCAAAGCATTGTCCCAGAACCCCGCCCTAACCACCGCTTCAATGGAATCCATTCAATCCATTATCTCCTTCCTTCTTTCCAAAGGCATCCTGCACAAAGACATTCCTAGGATCATCTCCATGTGCCCCAAGATTCTCACCTCTGACATCAATGCTGAGCTTGACCCAGTTTTTGATTTTCTCTCACACGACCTCAGAGTCCCAGATCATAACTTTAGGAAGGTTATCAATAAGTGCCCATTTTTGCTTACCGCCAGTGTTGTAGATCAGCTTAAGCCAACTTTGTTTTATCTTAGGAGATTTGGCTTGAAGGACTTGAAGCTTCTGGCTTATCAAGAACCTGTTCTGTTGGTCTCTAGTGTTGAGAAATCCTTAATTCCTAAGCTGAGGTATTTGGAGAGTTTGGGATTCTCAAAGGATGAGGTTAAGGATATGGTCTTGAGATGTCCATCATTGCTCACTTTCAACATTGAAGCTAATTTTCGGCCAAAGTTCGAGTATTTTGTCAGGGAAATGGGGAAGAAACTGAAGGAGCTGAAAGAGTTTCCCCAGTACTTTGCTTTTAGTTTGGAGAACAGGATAAAGCCTAGGCACATGGAGGTGGTGCAAAGTGGTATCAATTTGCCTTTGTCACTGATGCTTGAAAGCACTGATCAAGAGTTTAGGGAGCTGATAAAGCAGGAGGGTGGATGA 921 0.4463 MSGAAGAVALHTSMCSFSSSHTHRPSSTPFNSHQPNTNIHLTSLLQTHPLYPLTNARLSLQFKEKILCLEIMGVDAGKALSQNPALTTASMESIQSIISFLLSKGILHKDIPRIISMCPKILTSDINAELDPVFDFLSHDLRVPDHNFRKVINKCPFLLTASVVDQLKPTLFYLRRFGLKDLKLLAYQEPVLLVSSVEKSLIPKLRYLESLGFSKDEVKDMVLRCPSLLTFNIEANFRPKFEYFVREMGKKLKELKEFPQYFAFSLENRIKPRHMEVVQSGINLPLSLMLESTDQEFRELIKQEGG 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc56g00021 306 PANTHER CGI-12 PROTEIN-RELATED 15 300 IPR003690 GO:0003690|GO:0006355
Stsc56g00021 306 SMART mt_12 183 214 IPR003690 GO:0003690|GO:0006355
Stsc56g00021 306 SMART mt_12 252 283 IPR003690 GO:0003690|GO:0006355
Stsc56g00021 306 SMART mt_12 219 251 IPR003690 GO:0003690|GO:0006355
Stsc56g00021 306 SMART mt_12 112 144 IPR003690 GO:0003690|GO:0006355
Stsc56g00021 306 SMART mt_12 149 180 IPR003690 GO:0003690|GO:0006355
Stsc56g00021 306 SMART mt_12 77 107 IPR003690 GO:0003690|GO:0006355
Stsc56g00021 306 FunFam Transcription termination factor MTEF1, chloroplastic 137 305 - -
Stsc56g00021 306 Pfam mTERF 147 297 IPR003690 GO:0003690|GO:0006355
Stsc56g00021 306 Pfam mTERF 69 184 IPR003690 GO:0003690|GO:0006355
Stsc56g00021 306 Gene3D Transcription termination factor 3, mitochondrial 139 303 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc56g00021 Stsc-Chr56 150152 151240 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc56g00021 mTERF 9.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc56g00021 K15031 - gmx:100788221 409.838